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@bio-ontology-research-group

Bio-Ontology Research Group

Bio-Ontology Research Group at KAUST

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  1. machine-learning-with-ontologies machine-learning-with-ontologies Public

    Jupyter Notebook 128 31

  2. mowl mowl Public

    mOWL: Machine Learning library with Ontologies

    Python 63 5

  3. deepgo2 deepgo2 Public

    Python 34 4

Repositories

Showing 10 of 206 repositories
  • mowl Public

    mOWL: Machine Learning library with Ontologies

    bio-ontology-research-group/mowl’s past year of commit activity
    Python 63 BSD-3-Clause 5 6 1 Updated Jan 19, 2025
  • pangenome Public

    Pangenome workflow in CWL

    bio-ontology-research-group/pangenome’s past year of commit activity
    Common Workflow Language 1 BSD-3-Clause 0 0 0 Updated Jan 19, 2025
  • catE Public

    Lattice-preserving ALC ontology embeddings

    bio-ontology-research-group/catE’s past year of commit activity
    Python 1 2 0 0 Updated Jan 5, 2025
  • EnzBuilder Public Forked from KexinNiu/EnzBuilder

    An iterative ML-based metabolic reconstruction framework; Simultaneously Improving Metabolic Model Reconstruction and Enzyme Function Annotation

    bio-ontology-research-group/EnzBuilder’s past year of commit activity
    Python 0 1 0 0 Updated Dec 30, 2024
  • DELE Public
    bio-ontology-research-group/DELE’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 30, 2024
  • mrsa-sequences Public

    Arvados sequence uploader and analyzer for MRSA project

    bio-ontology-research-group/mrsa-sequences’s past year of commit activity
    Python 0 1 2 8 Updated Nov 27, 2024
  • deepgometa Public
    bio-ontology-research-group/deepgometa’s past year of commit activity
    Python 6 BSD-3-Clause 0 0 0 Updated Nov 19, 2024
  • Genomic_context Public

    Protein function prediction (GO classes) using genomic context

    bio-ontology-research-group/Genomic_context’s past year of commit activity
    Python 2 0 0 0 Updated Nov 4, 2024
  • PU-GO Public

    Predicting protein functions using positive-unlabeled ranking with ontology-based priors

    bio-ontology-research-group/PU-GO’s past year of commit activity
    Python 3 2 1 0 Updated Oct 26, 2024
  • Causal-relations-between-diseases Public
    bio-ontology-research-group/Causal-relations-between-diseases’s past year of commit activity
    1 0 0 0 Updated Oct 2, 2024
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