Add version number consistency check for conda recipe #164
Workflow file for this run
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| name: Conda Build | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Check version number consistency | |
| shell: python {0} | |
| run: | | |
| "Compare the version numers from the package and the conda recipe." | |
| # collect the package version | |
| import sys | |
| sys.path.append("/home/runner/work/sdrf-pipelines/sdrf-pipelines") | |
| import sdrf_pipelines | |
| package_version = sdrf_pipelines.__version__ | |
| # collect the version from the conda recipe | |
| with open("./recipe/meta.yaml", encoding="utf-8") as f: | |
| for line in f.readlines(): | |
| if line.startswith(" version: "): | |
| recipe_version = line.lstrip(" version:").strip().strip('"') | |
| break | |
| if package_version == recipe_version: | |
| print(f"The package and recipe versions are consistent: {package_version}") | |
| else: | |
| raise ValueError( | |
| "ERROR: The versions are inconsistent." | |
| f"\nVersion in ./sdrf_pipelines/__init__.py: {package_version}" | |
| f"\nVersion in ./recipe/meta.yaml: {recipe_version}" | |
| ) | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: sdrf-pipelines | |
| environment-file: environment.yml | |
| auto-activate-base: false | |
| auto-update-conda: true | |
| python-version: '3.10' | |
| channels: conda-forge,bioconda,defaults | |
| - name: Install build dependencies | |
| run: | | |
| conda install conda-build conda-verify anaconda-client | |
| - name: Build the sdrf-pipelines package | |
| run: | | |
| conda build --package-format .tar.bz2 recipe | |
| - name: Install the package | |
| run: | | |
| PACKAGE_PATH=$(conda build --package-format .tar.bz2 --output recipe) | |
| conda install --offline "$PACKAGE_PATH" | |
| - name: Test install | |
| run: | | |
| parse_sdrf --help | |
| - name: Test validation of SDRF file | |
| run: | | |
| parse_sdrf validate-sdrf --sdrf_file tests/data/reference/PDC000126/PDC000126.sdrf.tsv | |
| - name: Test validation of SDRF file with cache only | |
| run: | | |
| parse_sdrf validate-sdrf --sdrf_file tests/data/reference/PDC000126/PDC000126.sdrf.tsv --use_ols_cache_only |