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cff-version: 1.2.0 | ||
message: "If you use ibaqpy in your research, please cite this work." | ||
title: "ibaqpy: A scalable Python package for baseline quantification in proteomics leveraging SDRF metadata" | ||
authors: | ||
- family-names: "Zheng" | ||
given-names: "Ping" | ||
- family-names: "Audain" | ||
given-names: "Enrique" | ||
- family-names: "Webel" | ||
given-names: "Henry" | ||
- family-names: "Dai" | ||
given-names: "Chengxin" | ||
- family-names: "Klein" | ||
given-names: "Joshua" | ||
- family-names: "Hitz" | ||
given-names: "Marc-Phillip" | ||
- family-names: "Sachsenberg" | ||
given-names: "Timo" | ||
- family-names: "Bai" | ||
given-names: "Mingze" | ||
- family-names: "Perez-Riverol" | ||
given-names: "Yasset" | ||
abstract: "Intensity-based absolute quantification (iBAQ) is essential in proteomics as it allows for the assessment of a protein's absolute abundance in various samples or conditions. However, the computation of these values for increasingly large-scale and high-throughput experiments, such as those using DIA, TMT, or LFQ workflows, poses significant challenges in scalability and reproducibility. Here, we present ibaqpy, a Python package designed to compute iBAQ values efficiently for experiments of any scale." | ||
date-released: "2025-02-08" | ||
doi: "10.1101/2025.02.08.637208" | ||
url: "https://www.biorxiv.org/content/early/2025/02/08/2025.02.08.637208" | ||
journal: "bioRxiv" | ||
publisher: "Cold Spring Harbor Laboratory" | ||
version: "2025.02.08.637208" |