chore: Use tox for style and spelling checks

.github/workflows/build-test-deploy.yml

@@ -118,11 +118,6 @@ jobs:
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
 
-      - name: Check formatting
-        run: |
-          pipx run flake8 src
-          pipx run pydocstyle src
-
   release-pypi:
     name: Publish released package to pypi.org
     environment: release-pypi

.github/workflows/checks.yml

@@ -0,0 +1,42 @@
+---
+name: Checks
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+# Force tox and pytest to use color
+env:
+  FORCE_COLOR: true
+
+permissions:
+  contents: read
+
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        check: ['style', 'spellcheck']
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python
+        uses: actions/setup-python@v5
+      - name: Install tox
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install tox tox-gh-actions
+      - name: Show tox config
+        run: tox c
+      - name: Run tox
+        run: tox -e ${{ matrix.check }}

pyproject.toml

@@ -82,6 +82,7 @@ extend-select = [
   "E",
   "W",
   "I",
+  "D",
   "UP",
   "YTT",
   "S",
@@ -101,6 +102,10 @@ extend-select = [
 ]
 ignore = [
   "ISC001",
+  "D105",
+  "D107",
+  "D203",
+  "D213",
 ]
 
 [tool.ruff.lint.flake8-quotes]

src/bids_validator/bids_validator.py

@@ -32,6 +32,7 @@ class LoggingContext:
         Handler to add temporarily. If None, no handler is added.
     close : bool
         Whether to close the handler after removing it. Defaults to True.
+
     """
 
     def __init__(self, logger, level=None, handler=None, close=True):

tox.ini

@@ -4,6 +4,8 @@ requires =
 envlist =
   py3{8,9,10,11,12}-{full,pre}
   py38-min
+  style
+  spellcheck
 skip_missing_interpreters = true
 
 # Configuration that allows us to split tests across GitHub runners effectively
@@ -21,6 +23,10 @@ DEPENDS =
   full: full
   pre: pre
 
+CHECK =
+  style: style
+  spellcheck: spellcheck
+
 [testenv]
 description = Pytest with coverage
 labels = test
@@ -59,14 +65,28 @@ extras = doc
 commands =
   make -C doc html
 
-[testenv:spellcheck]
+[testenv:style{,-fix}]
+description = Check and attempt to fix style
+labels = check
+deps =
+  ruff
+skip_install = true
+commands =
+  fix: ruff check --fix src/
+  fix: ruff format src/
+  fix: ruff check --select ISC001 --fix src/
+  !fix: ruff check src/
+  !fix: ruff format --diff src/
+
+[testenv:spellcheck{,-fix}]
 description = Check spelling
 labels = check
 deps =
   codespell[toml]
 skip_install = true
 commands =
-  codespell . {posargs}
+  fix: codespell -w {posargs}
+  !fix: codespell {posargs}
 
 [testenv:build{,-strict}]
 labels =