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remove deprecated updated field (#264)
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Remi-Gau authored Dec 12, 2022
1 parent a2d1183 commit fd1357c
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11 changes: 3 additions & 8 deletions _data/MEEG_converters.yml
Original file line number Diff line number Diff line change
@@ -1,7 +1,6 @@
# template
# - name:
# url: URL to repo
# updated: Date of last update either last release or substantial commit
# data_types:
# - EEG, MEG, iEEG, events
# expected_input:
Expand Down Expand Up @@ -33,7 +32,6 @@
- Python
documentation: https://gitlab.uliege.be/CyclotronResearchCentre/Public/bidstools/bidsme/bidsme_example/-/tree/master/example1
comment:
updated: 2021-08-18
license: GPL-2.0

- name: MNE-BIDS
Expand Down Expand Up @@ -61,7 +59,6 @@
MNE-BIDS is a Python package that allows you to read and write
BIDS-compatible datasets with the help of MNE-Python.
GUI: false
updated: 2022-09-04
license: BSD-3-Clause

- name: EEGLAB
Expand All @@ -79,7 +76,7 @@
comment:
"<a href='https://github.com/arnodelorme/bids-MATLAB-tools'>See
plugins</a>"
updated: 2021-09-29


- name: FieldTrip - data2bids
url: https://github.com/fieldtrip/fieldtrip
Expand All @@ -97,7 +94,6 @@
language:
- MATLAB
documentation: https://www.fieldtriptoolbox.org/example/bids/
updated: 2021-09-15
license: GPL-3.0

- name: Biscuit
Expand All @@ -110,7 +106,6 @@
documentation: https://macquarie-meg-research.github.io/Biscuit/
comment: GUI for easy MEG to BIDS conversion
GUI: true
updated: 2019-02-27
license: MIT

- name: sovabids
Expand All @@ -124,7 +119,7 @@
comment:
A Python package for the automatic conversion of EEG datasets to the
BIDS standard, with a focus on making the most out of metadata.
updated: 2021-08-23


- name: EEG2BIDS
url: https://github.com/aces/EEG2BIDS
Expand All @@ -139,4 +134,4 @@
A tool for converting raw EEG and iEEG data into the BIDS standard data
structure, prepared for LORIS (Longitudinal Online Research and Imaging
System).
updated: 2021-10-29

21 changes: 1 addition & 20 deletions _data/converters.yml
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@@ -1,7 +1,7 @@
# template
# - name:
# url: URL to repo
# updated: Date of last update either last release or substantial commit
#
# data_types:
# - MRI, EEG, MEG, iEEG, events, physio
# expected_input:
Expand Down Expand Up @@ -30,7 +30,6 @@
language:
- Python
comment: Tool to convert source MRI datasets to BIDS-compatible datasets.
updated: 2019-01-23
distribution:
- name: pypi
url: https://pypi.org/project/bidsify
Expand All @@ -48,7 +47,6 @@
comment:
Utility functions for working with DICOM and BIDS neuroimaging data.
documentation: https://github.com/jmtyszka/bidskit/blob/master/docs/QuickStart.md
updated: 2019-11-27
distribution:
- name: pypi
url: https://pypi.org/project/bidskit
Expand All @@ -67,7 +65,6 @@
comment: |
Converts MRI files from extension supported by nibabel into NIfTI and
convert them to BIDS
updated: 2019-07-03
distribution:
- name: pypi
url: https://pypi.org/project/data2bids
Expand All @@ -83,7 +80,6 @@
- Python
comment: converts DICOM files using dcm2niix into BIDS
documentation: https://unfmontreal.github.io/Dcm2Bids/
updated: 2021-02-27
distribution:
- name: pypi
url: https://pypi.org/project/Dcm2Bids
Expand All @@ -108,7 +104,6 @@
comment: |
A flexible DICOM converter for organizing brain imaging data into
structured directory layouts
updated: 2021-09-16
license: Apache 2.0

- name: OpenfMRI2BIDS
Expand All @@ -118,7 +113,6 @@
expected_input:
language:
comment: Convert OpenfMRI dataset to BIDS
updated: 2018-07-20

- name: ReproIn
url: https://github.com/ReproNim/reproin
Expand All @@ -130,7 +124,6 @@
comment:
"HeuDiConv-based turnkey solution: a setup for automatic generation of
shareable, version-controlled BIDS datasets from MR scanners."
updated: 2021-08-03
distribution:
- name: dockerhub
url: https://hub.docker.com/r/repronim/reproin
Expand All @@ -146,7 +139,6 @@
comment: |
Simple xnat pipeline to convert DICOM scans to BIDS-compatible output
(nii+json).
updated: 2018-07-20
- name: Horos (Osirix) export plugin
url: https://github.com/mslw/horos-bids-output
Expand All @@ -155,7 +147,6 @@
language:
- objective C
comment: Horos plugin for BIDS output.
updated: 2018-08-10
GUI: yes
license: GPL-3.0

Expand All @@ -178,7 +169,6 @@
url: https://pypi.org/project/bidscoin
documentation: https://bidscoin.readthedocs.io/en/stable/
comment: BIDScoin converts your source-level neuroimaging data to BIDS
updated: 2021-09-29
GUI: yes
license: GPL-3.0

Expand All @@ -195,7 +185,6 @@
language:
- Python
comment:
updated: 2021-08-18
license: GPL-2.0

- name: BrkRaw
Expand All @@ -208,7 +197,6 @@
- Python
GUI: yes
comment: For a preclinical Bruker MRI scanner
updated: 2021-08-24
license: GPL-3.0

- name: Clinica
Expand All @@ -223,7 +211,6 @@
language:
- Python
comment:
updated: 2021-09-30
documentation: https://aramislab.paris.inria.fr/clinica/docs/public/latest/
license: MIT

Expand All @@ -236,7 +223,6 @@
language:
- Python
comment: Create a BIDS structure for a DICOM folder.
updated: 2017-11-16

- name: Autobids
url: https://github.com/khanlab/autobids
Expand All @@ -248,7 +234,6 @@
Automated Dicom to BIDS and pipelines using compute canada. From the
Centre for Functional and Metabolic Mapping (CFMM) at Western’s Robarts
Research Institute.
updated: 2021-05-06
- name: PET2BIDS
url: https://github.com/openneuropet/PET2BIDS
Expand All @@ -263,7 +248,6 @@
language:
- MATLAB
- Python
updated: 2021-10-16
GUI: false
license: MIT

Expand All @@ -279,7 +263,6 @@
documentation: https://exploreasl.github.io/Documentation/1.8.0/Tutorials-ASL-BIDS/
language:
- MATLAB
updated: 2021-09-13

- name: SAMRI
url: https://github.com/IBT-FMI/SAMRI
Expand All @@ -288,7 +271,6 @@
repositing pipeline, which can convert Bruker archives to the BIDS format.
From the ETH and University of Zurich, with collaboration from MIT and
Dartmouth College.
updated: 2021-11-08
data_types:
- small-animal MRI
expected_input:
Expand All @@ -308,7 +290,6 @@
(i) convert DICOM data to NIfTI data using dcm2niix
(ii) structure this data according to the BIDS specification
(iii) provide the papayaWidget viewer for inspecting the images
updated: 2022-07-28
data_types:
- MRI
expected_input:
Expand Down
13 changes: 5 additions & 8 deletions _data/from_BIDS_converters.yml
Original file line number Diff line number Diff line change
@@ -1,7 +1,6 @@
# template
# - name:
# url: URL to repo
# updated: Date of last update either last release or substantial commit
# data_types:
# - MRI, EEG, MEG, iEEG, events
# expected_input:
Expand Down Expand Up @@ -33,8 +32,7 @@
language:
- Python
comment: Extract ISA-Tab compatible metadata from BIDS
updated: 2016-10-08
icense: Apache-2.0
license: Apache-2.0

- name: BIDSto3col
url: https://github.com/bids-standard/bidsutils/tree/master/BIDSto3col
Expand All @@ -48,7 +46,7 @@
comment:
Reads BidsTSV and then creates 3 column event files, one per event type
if a "trial_type" column is found.
updated: 2016-11-04


- name: BIDS2NDA
url: https://github.com/bids-standard/BIDS2NDA
Expand All @@ -58,7 +56,6 @@
language:
- Python
comment: Extract NIHM Data Archive compatible metadata from BIDS
updated: 2020-10-03
license: Apache-2.0

- name: bids2xar - for XNAT import
Expand All @@ -70,7 +67,7 @@
language:
- Python
comment: Convert BIDS data set into XNAT XAR bundles
updated: 2017-09-01


- name: BIDS2NIDM
url: https://github.com/incf-nidash/PyNIDM/blob/master/nidm/experiment/tools/nidm2bids.py
Expand All @@ -82,7 +79,7 @@
comment: |
This program will convert a NIDM-Experiment RDF document to a BIDS
dataset.
updated: 2021-09-16
- name: AFNI BIDS-tools
url: https://github.com/nih-fmrif/BIDS-tools
Expand All @@ -96,4 +93,4 @@
comment:
ARCHIVED - Scripts, tools, and documents on creating, parsing, and
working with BIDS-structured data sets.
updated: 2019-10-30

5 changes: 1 addition & 4 deletions _data/other_converters.yml
Original file line number Diff line number Diff line change
@@ -1,7 +1,6 @@
# template
# - name:
# url: URL to repo
# updated: Date of last update either last release or substantial commit
# data_types:
# - MRI, EEG, MEG, iEEG, events
# expected_input:
Expand Down Expand Up @@ -34,7 +33,6 @@
comment:
Python functions to convert E-Prime files to csvs. Not currently being
developed.
updated: 2020-05-18
license: MIT

- name: DCM2NIIx
Expand All @@ -47,7 +45,7 @@
C++ (compiled versions available from <a
href="https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage">NITRC</a>)
comment: "dcm2nii DICOM to NIfTI converter"
updated: 2021-06-01


- name: DICM2NII
url: https://github.com/xiangruili/dicm2nii
Expand All @@ -58,5 +56,4 @@
language:
- MATLAB
comment: "dcm2nii DICOM to NIfTI converter"
updated: 2021-09-24
license: BSD-2
4 changes: 0 additions & 4 deletions _data/physio_converters.yml
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@@ -1,7 +1,6 @@
# template
# - name:
# url: URL to repo
# updated: Date of last update either last release or substantial commit
# data_types:
# - physio
# expected_input:
Expand All @@ -20,7 +19,6 @@
- group:
name: Physiological data converters
comment:

members:
- name: BIDScoin
url: https://github.com/Donders-Institute/bidscoin
Expand All @@ -41,7 +39,6 @@
url: https://pypi.org/project/bidscoin
documentation: https://bidscoin.readthedocs.io/en/stable/
comment: BIDScoin converts your source-level neuroimaging data to BIDS
updated: 2021-09-29
GUI: yes
license: GPL-3

Expand All @@ -59,6 +56,5 @@
url: https://pypi.org/project/phys2bids
documentation: https://phys2bids.readthedocs.io/en/latest/
comment: Python3 library to format physiological files in BIDS.
updated: 2021-06-18
license: Apache-2.0

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