fix: incorrect correlation heatmap axes labels

[strixy16]

Vertical and horizontal feature labels were swapped on the x and y axes for the correlation heatmaps in plotCrossCorrHeatmap

Summary by CodeRabbit

• New Features

  • Added image processing module with advanced cropping and bounding box functionalities
  • Introduced methods for calculating image centroids and cropping images using various strategies

• Documentation

  • Added module-level docstrings for image processing components
  • Defined clear public interfaces for image manipulation functions

• Tests

  • Comprehensive test suite added for image cropping and processing functions
  • Implemented fixtures and test cases for different image manipulation scenarios

[coderabbitai]

Caution

Review failed

The pull request is closed.

Walkthrough

This pull request introduces comprehensive image processing capabilities for medical imaging, focusing on cropping and manipulating 3D images. The changes span multiple files in the readii package, adding new modules and functions for image cropping, bounding box calculations, and centroid identification. Additionally, there's a minor modification to the plotCrossCorrHeatmap function's axis labeling. The implementation includes robust type hinting, detailed docstrings, and accompanying unit tests to ensure the reliability of the new image processing functionalities.

Changes

File	Change Summary
src/readii/analyze/plot_correlation.py	Updated xlabel and ylabel parameters in plotCrossCorrHeatmap function
src/readii/process/images/__init__.py	Added module-level docstring and defined __all__ list for image processing functions
src/readii/process/images/crop.py	Added multiple functions for image cropping, bounding box calculation, and centroid finding
src/readii/process/images/utils/bounding_box.py	Introduced new classes: Point3D, Size3D, Coordinate, and Centroid for 3D spatial representations
tests/process/images/test_crop.py	Added comprehensive unit tests for new image processing functions

Sequence Diagram

sequenceDiagram
    participant Image
    participant Mask
    participant CropFunction
    participant ProcessedImage

    Image->>Mask: Provide input image and mask
    Mask->>CropFunction: Select cropping method
    CropFunction->>CropFunction: Calculate bounding box/centroid
    CropFunction->>ProcessedImage: Apply cropping
    ProcessedImage-->>Image: Return cropped image

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Possibly related PRs

• feat: update plot correlation functions #104: Modifications to the plotCrossCorrHeatmap function
• feat: add overwrite variable to plot self and cross corr functions #108: Added overwrite parameter to plotCrossCorrHeatmap function

Suggested reviewers

• jjjermiah

Poem

🐰 Hop, hop, through pixels bright,
Cropping images with rabbit might!
Bounding boxes dance and sway,
Centroids marking the scientific way
Code hops forward, images take flight! 🔬

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Configuration used: CodeRabbit UI
Review profile: CHILL
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📥 Commits

Reviewing files that changed from the base of the PR and between 3df3a55 and 67df81b.

📒 Files selected for processing (5)

• src/readii/analyze/plot_correlation.py (1 hunks)
• src/readii/process/images/__init__.py (1 hunks)
• src/readii/process/images/crop.py (1 hunks)
• src/readii/process/images/utils/bounding_box.py (1 hunks)
• tests/process/images/test_crop.py (1 hunks)

✨ Finishing Touches

• 📝 Generate Docstrings (Beta)

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