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Add bio.tools entry to MuSiC deconvolution tools #1543

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Nov 6, 2024
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3 changes: 2 additions & 1 deletion tools/music_deconvolution/construct_eset.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@
<macros>
<import>macros.xml</import>
</macros>
<expand macro="xrefs"/>
<expand macro="requirements" />
<command detect_errors="exit_code"><![CDATA[
cat '$conf' >> /dev/stderr &&
Expand Down Expand Up @@ -228,4 +229,4 @@ For more options and information, consult `the manual <http://www.bioconductor.o
}
</citation>
</citations>
</tool>
</tool>
3 changes: 2 additions & 1 deletion tools/music_deconvolution/inspect_eset.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@
<macros>
<import>macros.xml</import>
</macros>
<expand macro="xrefs"/>
<expand macro="requirements"/>
<command detect_errors="exit_code"><![CDATA[
cat '$conf' >> /dev/stderr &&
Expand Down Expand Up @@ -123,4 +124,4 @@ For more options and information, consult `the manual <http://www.bioconductor.o
}
</citation>
</citations>
</tool>
</tool>
5 changes: 5 additions & 0 deletions tools/music_deconvolution/macros.xml
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,11 @@
in 21.09
<token name="@RDATATYPE@">rdata.eset</token>
-->
<xml name="xrefs">
<xrefs>
<xref type="bio.tools">music_deconvolution</xref>
</xrefs>
</xml>
<xml name="requirements">
<requirements>
<requirement type="package" version="@TOOL_VERSION@" >music-deconvolution</requirement>
Expand Down
1 change: 1 addition & 0 deletions tools/music_deconvolution/manipulate_eset.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@
<macros>
<import>macros.xml</import>
</macros>
<expand macro="xrefs"/>
<expand macro="requirements"/>
<command detect_errors="exit_code"><![CDATA[
cat '$conf' >> /dev/stderr &&
Expand Down
3 changes: 2 additions & 1 deletion tools/music_deconvolution/music_compare.xml
Original file line number Diff line number Diff line change
Expand Up @@ -29,6 +29,7 @@
</repeat>
</macro>
</macros>
<expand macro="xrefs"/>
<expand macro="requirements" />
<command detect_errors="exit_code" ><![CDATA[
cat '$conf' >> /dev/stderr &&
Expand Down Expand Up @@ -220,4 +221,4 @@ The resulting plots will combine all the bulk datasets and their learned cell ty
<citations>
<citation type="doi">https://doi.org/10.1038/s41467-018-08023-x</citation>
</citations>
</tool>
</tool>
3 changes: 2 additions & 1 deletion tools/music_deconvolution/music_deconvolution.xml
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@
<macros>
<import>macros.xml</import>
</macros>
<expand macro="xrefs"/>
<expand macro="requirements" />
<command detect_errors="exit_code" ><![CDATA[
cat '$conf' >> /dev/stderr &&
Expand Down Expand Up @@ -313,4 +314,4 @@ Solid tissues often contain closely related cell types which leads to collineari
<citations>
<citation type="doi">https://doi.org/10.1038/s41467-018-08023-x</citation>
</citations>
</tool>
</tool>
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