two+ column AIO/OBO bridging

berkeleybop · Aug 6, 2024 · 5ba887c · 5ba887c
1 parent 5860e51
commit 5ba887c
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Showing 2 changed files with 69 additions and 20 deletions.
diff --git a/src/ontology/bridge/aio-bridge-to-upper.owl b/src/ontology/bridge/aio-bridge-to-upper.owl
@@ -1,15 +1,12 @@
 <?xml version="1.0"?>
-<rdf:RDF xmlns="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl#"
-     xml:base="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl"
-     xmlns:obo="http://purl.obolibrary.org/obo/"
+<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
+     xml:base="http://www.w3.org/2002/07/owl"
      xmlns:owl="http://www.w3.org/2002/07/owl#"
      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:xml="http://www.w3.org/XML/1998/namespace"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-    <owl:Ontology rdf:about="https://w3id.org/aio/bridge/aio-bridge-to-upper.owl">
-        <owl:versionIRI rdf:resource="https://w3id.org/aio/releases/2024-08-05/bridge/aio-bridge-to-caro.owl"/>
-    </owl:Ontology>
+    <Ontology/>
 
 
 
@@ -24,37 +21,80 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/OBI_0002587 -->
+    <!-- http://purl.obolibrary.org/obo/BFO_0000016 -->
 
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0002587">
-        <owl:equivalentClass rdf:resource="https://w3id.org/aio/MachineLearning"/>
-        <rdfs:label>machine learning</rdfs:label>
-    </owl:Class>
+    <Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000016"/>
 
 
 
-    <!-- http://purl.obolibrary.org/obo/OBI_0200000 -->
+    <!-- http://purl.obolibrary.org/obo/IAO_0000030 -->
 
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200000">
-        <rdfs:label xml:lang="en">data transformation</rdfs:label>
-    </owl:Class>
+    <Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030"/>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OBI_0000011 -->
+
+    <Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
+
+
+
+    <!-- https://w3id.org/aio/Bias -->
+
+    <Class rdf:about="https://w3id.org/aio/Bias">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
+    </Class>
+
+
+
+    <!-- https://w3id.org/aio/Function -->
+
+    <Class rdf:about="https://w3id.org/aio/Function">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
+    </Class>
+
+
+
+    <!-- https://w3id.org/aio/Layer -->
+
+    <Class rdf:about="https://w3id.org/aio/Layer">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+    </Class>
 
 
 
     <!-- https://w3id.org/aio/MachineLearning -->
 
-    <owl:Class rdf:about="https://w3id.org/aio/MachineLearning"/>
+    <Class rdf:about="https://w3id.org/aio/MachineLearning">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
+    </Class>
+
+
+
+    <!-- https://w3id.org/aio/Model -->
+
+    <Class rdf:about="https://w3id.org/aio/Model">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+    </Class>
+
+
+
+    <!-- https://w3id.org/aio/Network -->
+
+    <Class rdf:about="https://w3id.org/aio/Network">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
+    </Class>
 
 
 
     <!-- https://w3id.org/aio/Preprocessing -->
 
-    <owl:Class rdf:about="https://w3id.org/aio/Preprocessing">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0200000"/>
-    </owl:Class>
+    <Class rdf:about="https://w3id.org/aio/Preprocessing">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
+    </Class>
 </rdf:RDF>
 
 
 
-<!-- Generated by the OWL API (version 4.5.25.2023-02-15T19:15:49Z) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->
 
diff --git a/src/ontology/bridge/aio-bridge-to-upper.tsv b/src/ontology/bridge/aio-bridge-to-upper.tsv
@@ -0,0 +1,9 @@
+CJM col 1	CJM col 2	AIO current label	AIO propsed label	OBO label	OBO id
+		ID			SC % 
+Bias	disposition	aio:Bias		disposition	BFO:0000016
+Function	rename to MathematicalFunction, place under Planned Process?	aio:Function	aio:MathematicalFunction	planned process	OBI:0000011
+Layer	information artefavt	aio:Layer		information content entity	IAO:0000030
+Machine Learning	relabel to Machine Learning Task. Planned Process	aio:MachineLearning	aio:MachineLearningTask	planned process	OBI:0000011
+Model	Information Artefact	aio:Model		information content entity	IAO:0000030
+Network	Information Aretfact	aio:Network		information content entity	IAO:0000030
+Preprocessing	Planned Process	aio:Preprocessing		planned process	OBI:0000011