DIAMOND v2.0.6

• Changed the computation of expected values to use the method described in Park, Y., Sheetlin, S., Ma, N. et al. New finite-size correction for local alignment score distributions. BMC Res Notes 5, 286 (2012).
• Enabled the use of a custom scoring matrix without having to specify the statistical parameters (option --custom-matrix).
• Added support for compositional matrix adjust as described in Yi-Kuo Yu, Stephen F. Altschul, The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions, Bioinformatics, Volume 21, Issue 7, 1 April 2005, Pages 902–911. Three additional modes have been added that can be enabled by setting --comp-based-stats (2,3,4) (the feature is not enabled by default and does not support translated searches at the moment).
• Fixed a bug that could cause incorrect alignment coordinates, gaps counts and sequence identities being reported by diamond view.
• Targets are sorted by bit score instead of e-value in the alignment output when the --top parameter is used.
• Disabled support of custom scoring matrices for the DAA format.
• Fixed a bug that caused the use of a custom scoring matrix not to function correctly.
• Fixed an issue that caused the portable binary not to function on systems that did not support AVX.
• Added the option --no-unlink to prevent unlinking of temporary files.