Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Bacpop-209 Beebop:AMR info to Microreact #87

Merged
merged 6 commits into from
Jan 21, 2025

Conversation

absternator
Copy link
Contributor

@absternator absternator commented Jan 16, 2025

This PR is in conjunction with beebop_py pr.
The purpose is to pass along AMR information to an info_csv metadata file that is passed into visualise for microreact. This means that this AMR info will show on the table when visiting microreact page.

Also added Status column as default into microreact and sorted so query samples show first before ref samples.

Testing:
Create a project with samples and run. Then visit microreact, the AMR columns should show by default and query samples should be on top of ref samples.
have also deployed on beebop-dev if its easier

@absternator absternator changed the title Bacpop 209 amr microreact Bacpop-209 AMR info to Microreact Jan 16, 2025
@absternator absternator changed the title Bacpop-209 AMR info to Microreact Bacpop-209 Beebop:AMR info to Microreact Jan 16, 2025
Copy link

codecov bot commented Jan 16, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 98.84%. Comparing base (7274f6b) to head (3044dce).
Report is 7 commits behind head on bacpop-186-v9-db.

Additional details and impacted files
@@                Coverage Diff                @@
##           bacpop-186-v9-db      #87   +/-   ##
=================================================
  Coverage             98.83%   98.84%           
=================================================
  Files                    34       34           
  Lines                  2064     2075   +11     
  Branches                271      271           
=================================================
+ Hits                   2040     2051   +11     
  Misses                   24       24           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

Copy link
Collaborator

@EmmaLRussell EmmaLRussell left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Should we flag up to Nick/users that the column names in the export file have changed?

}

export interface AMRMetadataCsv extends AMRForCsv {
ID: string;
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

..deviating from more customary lower case id..?

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

yeah just the format the microeact defaults to (ID)

@absternator
Copy link
Contributor Author

Should we flag up to Nick/users that the column names in the export file have changed?

good idea will do

@absternator absternator merged commit ad01292 into bacpop-186-v9-db Jan 21, 2025
11 checks passed
@absternator absternator deleted the bacpop-209-amr-microreact branch January 21, 2025 10:27
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants