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ayoraind committed Mar 14, 2023
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Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion modules/messages.nf
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Expand Up @@ -6,7 +6,7 @@ def helpMessage() {
Mandatory arguments:
--reads Query fastq.gz file of sequences you wish to supply as input (e.g., "/MIGE/01_DATA/01_FASTQ/T055-8-*.fastq.gz")
--output_dir Output directory to place output (e.g., "/MIGE/01_DATA/03_ASSEMBLY")
--output_dir Output directory to place output (e.g., "/MIGE/01_DATA/01_FASTQ")
--reference_fasta fasta file to be used as reference (e.g., /path/to/GRCh38.primary_assembly.genome.fa)
Optional arguments:
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