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gsc74 authored Feb 7, 2023
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Expand Up @@ -63,7 +63,7 @@ We have compared Minichain (v1.1) with existing sequence to graph aligners to de



**Graph generation:** Minichain (v1.1) can construct a human pangenome graph. Our experiments utilized [94 high-quality haplotype assemblies](https://github.com/human-pangenomics/HPP_Year1_Assemblies) from the Human Pangenome Reference Consortium and [CHM13 human genome assembly](https://www.ncbi.nlm.nih.gov/assembly/GCA_009914755.4) from the Telomere-to-Telomere consortium. Minichain took 58 hours and 17 minutes, utilizing 483 GB of RAM and 32 threads ([Cori cmem node](https://docs.nersc.gov/systems/cori-largemem/#node-features)).
**Graph generation:** Minichain (v1.1) can construct a human pangenome graph. Our experiments utilized [94 high-quality haplotype assemblies](https://github.com/human-pangenomics/HPP_Year1_Assemblies) from the Human Pangenome Reference Consortium and [CHM13 human genome assembly](https://www.ncbi.nlm.nih.gov/assembly/GCA_009914755.4) from the Telomere-to-Telomere consortium. Minichain took 58 hours and 17 minutes, utilizing 483 GB of RAM and 32 threads ([Cori Large Memory node](https://docs.nersc.gov/systems/cori/#login-nodes)).

## <a name="future_work"></a>Future work
We plan to continue adding features in future releases.
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