This repository contains the supports for a tutorial to perform AD Classification using Clinica.
When cloning remember to include the submodules:
git submodule update --init --recursive
Jupyter-book is automatically deployed here: https://aramislab.paris.inria.fr/clinicadl/tuto/intro.html
When Notebooks-AD-DL is updated, type:
git submodule update --remote
to update the Jupyter-book.
To run locally, please install the necessary packages inside a conda environment:
conda create -y -n clinicadl_tuto python=3.7
conda activate clinicadl_tuto
pip install jupyterlab
pip install clinicadl==0.2.1Then, you can clone the repository containing this tutorial and lauch the notebooks from inside:
git clone [email protected]:aramis-lab/MICCAI-educational-challenge-2020.git
cd ./Notebooks-AD-DL
jupyter notebook