Tags: aparton/ensembl-vep
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Merging postreleasefix/91 to release/91 * postreleasefix/91: add hardcoded frequency test variants fix var cache info error cat into sort prevents running out of memory subversion update check defined before sedding gene_symbol should be exempt from numberification in JSON output remove any whitespace crud from input freeze installed Bio-DB-HTS version, move other installed versions to top for clarity
Merge pull request Ensembl#113 from willmclaren/release/91 freeze installed Bio-DB-HTS version, move other installed versions to…
Merging postreleasefix/90 to release/90 * postreleasefix/90: sub version update
Merging postreleasefix/90 to release/90 * postreleasefix/90: fix for nuking existing CSQ so to avoid leaving consecutive semi-colons cell_type is comma-separated flag, not a flag that can be given more than once subversion update allow for VCF INFO fields with no value allow to skip empty lines
Merging postreleasefix/90 to release/90 * postreleasefix/90: better checks for population names passed when using --check_frequency fix when selecting ExAC_Adj dont run coveralls on perl5.8 as it is no longer supported subversion update remove pipe from fields written to VCF, add some extra tests ensure VCF chunks dont have spaces subversion update patch up funcgen schema and others to avoid test fails test for duplicate transcript removal deal better with duplicates from otherfeatures db
Merging postreleasefix/90 to release/90 * postreleasefix/90: subversion update add some extra fork-failure safeguards, checks and tests
Merging postreleasefix/90 to release/90 * postreleasefix/90: subversion update check SYMBOL exists before sedding it
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