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aparton · Jan 29, 2018 · e0cfa2e · e0cfa2e
1 parent 6133706
commit e0cfa2e
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/modules/Bio/EnsEMBL/VEP/AnnotationType/Transcript.pm b/modules/Bio/EnsEMBL/VEP/AnnotationType/Transcript.pm
@@ -207,7 +207,8 @@ sub filter_transcript {
   if(
     !$self->{all_refseq} &&
     (
-      # we only want RefSeq transcripts e.g. NM_12930
+      # we only want RefSeq transcripts e.g. NM_12930,
+      # or 4540 for MT transcripts
       (
         $self->{source_type} eq 'refseq' &&
         ($t->stable_id || '') !~ /^[A-Z]{2}\_\d+|^\d{4}$/