format AF for insertion/deletion

aparton · Sep 4, 2017 · 4dd84f6 · 4dd84f6
1 parent 832fa86
commit 4dd84f6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/Bio/EnsEMBL/VEP/OutputFactory/JSON.pm b/modules/Bio/EnsEMBL/VEP/OutputFactory/JSON.pm
@@ -370,7 +370,7 @@ sub add_colocated_variant_info_JSON {
       my $tmp = $ex->{$pop};
       my $lc_pop = lc($pop);
 
-      if($tmp =~ /(\w)\:([\d\.\-e]+)/) {
+      if($tmp =~ /(\D)\:([\d\.\-e]+)/) {
         $ex->{$lc_pop.'_maf'} = $2;
         $ex->{$lc_pop.'_allele'} = $1;
       }