Merge pull request #115 from aodn/UpdatePoetry

Fix github action segmentation fault by pinning poetry version

.github/workflows/build.yml

@@ -40,6 +40,7 @@ jobs:
           virtualenvs-create: true
           virtualenvs-in-project: true
           installer-parallel: true
+          version: 2.0.1
 
       #----------------------------------------------
       #       load cached venv if cache exists

.github/workflows/pre-commit.yml

@@ -24,13 +24,14 @@ jobs:
         virtualenvs-create: true
         virtualenvs-in-project: true
         installer-parallel: true
+        version: 2.0.1
 
     - name: Clear Poetry Cache
       run: |
         poetry cache clear pypi --all
 
     - name: Run pre-commit
-      uses: pre-commit/[email protected].0
+      uses: pre-commit/[email protected].1
       with:
         extra_args: --all-files
         hooks: |

.github/workflows/release.yml

@@ -25,6 +25,8 @@ jobs:
           virtualenvs-create: true
           virtualenvs-in-project: true
           installer-parallel: true
+          version: 2.0.1
+
 
       #----------------------------------------------
       #       load cached venv if cache exists

environment.yml

@@ -13,5 +13,5 @@ dependencies:
   - scipy
   - pip<24.1
   - pip:
-    - poetry
+    - poetry==2.0.1
     - -r requirements.txt

pyproject.toml

@@ -51,16 +51,17 @@ colorama = ">=0.4.6"
 s3path = ">=0.5.7"
 python-levenshtein = "^0.25.1"
 
-[tool.poetry.dev-dependencies]
+[tool.poetry.group.dev.dependencies]
+poetry = ">=2.0.1"
 pytest = "^8.2.1"
 ipdb = "^0.13"
 ipython = "^7.5.3"
 coverage = "^7.5.3"
-pre-commit = "^3.7.1"
+pre-commit = "^4.0.1"
 moto = {version = ">=5.0.0", extras = ["ec2", "s3",  "server", "all"]}  # Add Moto with optional dependencies
 fuzzywuzzy = ">=0.18.0"
 sphinx = ">=7.3.7"
-poetry-pre-commit-plugin = "^0.1.2"
+poetry-pre-commit-plugin = ">=0.2.1"
 asciinema = ">=2.4.0"  # to record terminal sessions, useful for documentation
 matplotlib = "^3.9.1"
 cartopy = ">=0.23.0"
@@ -71,6 +72,7 @@ seaborn = ">=0.13.2"
 windrose = ">=1.9.2"
 
 
+
 #[tool.poetry.extras]
 #testing = ["pytest", "ipython", "ipdb"]
 #interactive = ["pytest", "ipython", "ipdb"]
@@ -138,22 +140,6 @@ generic_cloud_optimised_creation = "aodn_cloud_optimised.bin.generic_cloud_optim
 #[tool.poetry.include]
 #data = ["aodn_cloud_optimised/config/*.json", "aodn_cloud_optimised/config/dataset/*.json"]
 
-[tool.poetry.group.dev.dependencies]
-pytest = "^8.2.1"
-ipdb = "^0.13"
-ipython = "^7.5.3"
-coverage = "^7.5.3"
-pre-commit = "^3.7.1"
-moto = {version = ">=5.0.0", extras = ["ec2", "s3",  "server", "all"]}  # Add Moto with optional dependencies
-fuzzywuzzy = ">=0.18.0"
-sphinx = ">=7.3.7"
-poetry-pre-commit-plugin = "^0.1.2"
-asciinema = ">=2.4.0"  # to record terminal sessions, useful for documentation
-matplotlib = "^3.9.1"
-termcolor = "^2.4.0"
-nbformat = "^5.10.4"
-cartopy = "^0.23.0"
-gsw = ">=3.6.19"
 
 
 [tool.pre_commit]

requirements.txt

@@ -1,42 +1,42 @@
-aiobotocore==2.15.2 ; python_version >= "3.10" and python_version < "4.0"
+aiobotocore==2.17.0 ; python_version >= "3.10" and python_version < "4.0"
 aiohappyeyeballs==2.4.4 ; python_version >= "3.10" and python_version < "4.0"
-aiohttp==3.11.10 ; python_version >= "3.10" and python_version < "4.0"
+aiohttp==3.11.11 ; python_version >= "3.10" and python_version < "4.0"
 aioitertools==0.12.0 ; python_version >= "3.10" and python_version < "4.0"
-aiosignal==1.3.1 ; python_version >= "3.10" and python_version < "4.0"
-anyio==4.7.0 ; python_version >= "3.10" and python_version < "4.0"
+aiosignal==1.3.2 ; python_version >= "3.10" and python_version < "4.0"
+anyio==4.8.0 ; python_version >= "3.10" and python_version < "4.0"
 appnope==0.1.4 ; python_version >= "3.10" and python_version < "4.0" and sys_platform == "darwin"
 asciitree==0.3.3 ; python_version >= "3.10" and python_version < "4.0"
 async-timeout==5.0.1 ; python_version >= "3.10" and python_version < "3.11"
-attrs==24.2.0 ; python_version >= "3.10" and python_version < "4.0"
+attrs==24.3.0 ; python_version >= "3.10" and python_version < "4.0"
 backcall==0.2.0 ; python_version >= "3.10" and python_version < "4.0"
 backoff==2.2.1 ; python_version >= "3.10" and python_version < "4.0"
 bcrypt==4.2.1 ; python_version >= "3.10" and python_version < "4.0"
 bokeh==3.6.2 ; python_version >= "3.10" and python_version < "4.0"
-boto3==1.35.36 ; python_version >= "3.10" and python_version < "4.0"
-botocore==1.35.36 ; python_version >= "3.10" and python_version < "4.0"
-certifi==2024.8.30 ; python_version >= "3.10" and python_version < "4.0"
+boto3==1.35.93 ; python_version >= "3.10" and python_version < "4.0"
+botocore==1.35.93 ; python_version >= "3.10" and python_version < "4.0"
+certifi==2024.12.14 ; python_version >= "3.10" and python_version < "4.0"
 cffi==1.17.1 ; python_version >= "3.10" and python_version < "4.0"
 cftime==1.6.4.post1 ; python_version >= "3.10" and python_version < "4.0"
-click==8.1.7 ; python_version >= "3.10" and python_version < "4.0"
-cloudpickle==3.1.0 ; python_version >= "3.10" and python_version < "4.0"
-coiled==1.67.0 ; python_version >= "3.10" and python_version < "4.0"
+click==8.1.8 ; python_version >= "3.10" and python_version < "4.0"
+cloudpickle==3.1.1 ; python_version >= "3.10" and python_version < "4.0"
+coiled==1.71.2 ; python_version >= "3.10" and python_version < "4.0"
 colorama==0.4.6 ; python_version >= "3.10" and python_version < "4.0"
 comm==0.2.2 ; python_version >= "3.10" and python_version < "4.0"
 contourpy==1.3.1 ; python_version >= "3.10" and python_version < "4.0"
 cryptography==44.0.0 ; python_version >= "3.10" and python_version < "4.0"
 dask-cloudprovider==2024.9.1 ; python_version >= "3.10" and python_version < "4.0"
-dask-expr==1.1.20 ; python_version >= "3.10" and python_version < "4.0"
-dask==2024.12.0 ; python_version >= "3.10" and python_version < "4.0"
-dask[array,diagnostics]==2024.12.0 ; python_version >= "3.10" and python_version < "4.0"
+dask-expr==1.1.21 ; python_version >= "3.10" and python_version < "4.0"
+dask==2024.12.1 ; python_version >= "3.10" and python_version < "4.0"
+dask[array,diagnostics]==2024.12.1 ; python_version >= "3.10" and python_version < "4.0"
 decorator==5.1.1 ; python_version >= "3.10" and python_version < "4.0"
 deprecated==1.2.15 ; python_version >= "3.10" and python_version < "4.0"
-distributed==2024.12.0 ; python_version >= "3.10" and python_version < "4.0"
+distributed==2024.12.1 ; python_version >= "3.10" and python_version < "4.0"
 exceptiongroup==1.2.2 ; python_version >= "3.10" and python_version < "3.11"
 fabric==3.2.2 ; python_version >= "3.10" and python_version < "4.0"
 fasteners==0.19 ; python_version >= "3.10" and python_version < "4.0" and sys_platform != "emscripten"
 filelock==3.16.1 ; python_version >= "3.10" and python_version < "4.0"
 frozenlist==1.5.0 ; python_version >= "3.10" and python_version < "4.0"
-fsspec==2024.10.0 ; python_version >= "3.10" and python_version < "4.0"
+fsspec==2024.12.0 ; python_version >= "3.10" and python_version < "4.0"
 geopandas==1.0.1 ; python_version >= "3.10" and python_version < "4.0"
 gilknocker==0.4.1 ; python_version >= "3.10" and python_version < "4.0"
 h11==0.14.0 ; python_version >= "3.10" and python_version < "4.0"
@@ -45,15 +45,15 @@ h5netcdf==1.4.1 ; python_version >= "3.10" and python_version < "4.0"
 h5py==3.11.0 ; python_version >= "3.10" and python_version < "4.0"
 hpack==4.0.0 ; python_version >= "3.10" and python_version < "4.0"
 httpcore==1.0.7 ; python_version >= "3.10" and python_version < "4.0"
-httpx[http2]==0.28.0 ; python_version >= "3.10" and python_version < "4.0"
+httpx[http2]==0.28.1 ; python_version >= "3.10" and python_version < "4.0"
 hyperframe==6.0.1 ; python_version >= "3.10" and python_version < "4.0"
 idna==3.10 ; python_version >= "3.10" and python_version < "4.0"
 importlib-metadata==8.5.0 ; python_version >= "3.10" and python_version < "4.0"
 invoke==2.2.0 ; python_version >= "3.10" and python_version < "4.0"
 ipython==7.34.0 ; python_version >= "3.10" and python_version < "4.0"
 ipywidgets==8.1.5 ; python_version >= "3.10" and python_version < "4.0"
 jedi==0.19.2 ; python_version >= "3.10" and python_version < "4.0"
-jinja2==3.1.4 ; python_version >= "3.10" and python_version < "4.0"
+jinja2==3.1.5 ; python_version >= "3.10" and python_version < "4.0"
 jmespath==1.0.1 ; python_version >= "3.10" and python_version < "4.0"
 jsondiff==2.2.1 ; python_version >= "3.10" and python_version < "4.0"
 jsonschema-specifications==2024.10.1 ; python_version >= "3.10" and python_version < "4.0"
@@ -78,38 +78,38 @@ parso==0.8.4 ; python_version >= "3.10" and python_version < "4.0"
 partd==1.4.2 ; python_version >= "3.10" and python_version < "4.0"
 pexpect==4.9.0 ; python_version >= "3.10" and python_version < "4.0" and sys_platform != "win32"
 pickleshare==0.7.5 ; python_version >= "3.10" and python_version < "4.0"
-pillow==11.0.0 ; python_version >= "3.10" and python_version < "4.0"
+pillow==11.1.0 ; python_version >= "3.10" and python_version < "4.0"
 pip-requirements-parser==32.0.1 ; python_version >= "3.10" and python_version < "4.0"
 pip==24.3.1 ; python_version >= "3.10" and python_version < "4.0"
 prometheus-client==0.21.1 ; python_version >= "3.10" and python_version < "4.0"
 prompt-toolkit==3.0.48 ; python_version >= "3.10" and python_version < "4.0"
 propcache==0.2.1 ; python_version >= "3.10" and python_version < "4.0"
-psutil==6.1.0 ; python_version >= "3.10" and python_version < "4.0"
+psutil==6.1.1 ; python_version >= "3.10" and python_version < "4.0"
 ptyprocess==0.7.0 ; python_version >= "3.10" and python_version < "4.0" and sys_platform != "win32"
 pyarrow==17.0.0 ; python_version >= "3.10" and python_version < "4.0"
 pycparser==2.22 ; python_version >= "3.10" and python_version < "4.0"
-pygments==2.18.0 ; python_version >= "3.10" and python_version < "4.0"
+pygments==2.19.1 ; python_version >= "3.10" and python_version < "4.0"
 pynacl==1.5.0 ; python_version >= "3.10" and python_version < "4.0"
 pyogrio==0.10.0 ; python_version >= "3.10" and python_version < "4.0"
-pyparsing==3.2.0 ; python_version >= "3.10" and python_version < "4.0"
+pyparsing==3.2.1 ; python_version >= "3.10" and python_version < "4.0"
 pyproj==3.7.0 ; python_version >= "3.10" and python_version < "4.0"
 python-dateutil==2.9.0.post0 ; python_version >= "3.10" and python_version < "4.0"
 python-levenshtein==0.25.1 ; python_version >= "3.10" and python_version < "4.0"
 pytz==2024.2 ; python_version >= "3.10" and python_version < "4.0"
 pyyaml==6.0.2 ; python_version >= "3.10" and python_version < "4.0"
-rapidfuzz==3.10.1 ; python_version >= "3.10" and python_version < "4.0"
+rapidfuzz==3.11.0 ; python_version >= "3.10" and python_version < "4.0"
 rechunker==0.5.2 ; python_version >= "3.10" and python_version < "4.0"
 referencing==0.35.1 ; python_version >= "3.10" and python_version < "4.0"
 rich==13.9.4 ; python_version >= "3.10" and python_version < "4.0"
 rpds-py==0.22.3 ; python_version >= "3.10" and python_version < "4.0"
-s3fs==2024.10.0 ; python_version >= "3.10" and python_version < "4.0"
+s3fs==2024.12.0 ; python_version >= "3.10" and python_version < "4.0"
 s3path==0.6.0 ; python_version >= "3.10" and python_version < "4.0"
 s3transfer==0.10.4 ; python_version >= "3.10" and python_version < "4.0"
-scipy==1.14.1 ; python_version >= "3.10" and python_version < "4.0"
-setuptools==75.6.0 ; python_version >= "3.10" and python_version < "4.0"
+scipy==1.15.1 ; python_version >= "3.10" and python_version < "4.0"
+setuptools==75.8.0 ; python_version >= "3.10" and python_version < "4.0"
 shapely==2.0.6 ; python_version >= "3.10" and python_version < "4.0"
 six==1.17.0 ; python_version >= "3.10" and python_version < "4.0"
-smart-open==7.0.5 ; python_version >= "3.10" and python_version < "4.0"
+smart-open==7.1.0 ; python_version >= "3.10" and python_version < "4.0"
 sniffio==1.3.1 ; python_version >= "3.10" and python_version < "4.0"
 sortedcontainers==2.4.0 ; python_version >= "3.10" and python_version < "4.0"
 tblib==3.0.0 ; python_version >= "3.10" and python_version < "4.0"
@@ -119,11 +119,11 @@ tornado==6.4.2 ; python_version >= "3.10" and python_version < "4.0"
 traitlets==5.14.3 ; python_version >= "3.10" and python_version < "4.0"
 typing-extensions==4.12.2 ; python_version >= "3.10" and python_version < "4.0"
 tzdata==2024.2 ; python_version >= "3.10" and python_version < "4.0"
-urllib3==2.2.3 ; python_version >= "3.10" and python_version < "4.0"
+urllib3==2.3.0 ; python_version >= "3.10" and python_version < "4.0"
 wcwidth==0.2.13 ; python_version >= "3.10" and python_version < "4.0"
 wheel==0.45.1 ; python_version >= "3.10" and python_version < "4.0"
 widgetsnbextension==4.0.13 ; python_version >= "3.10" and python_version < "4.0"
-wrapt==1.17.0 ; python_version >= "3.10" and python_version < "4.0"
+wrapt==1.17.2 ; python_version >= "3.10" and python_version < "4.0"
 xarray[complete]==2024.9.0 ; python_version >= "3.10" and python_version < "4.0"
 xyzservices==2024.9.0 ; python_version >= "3.10" and python_version < "4.0"
 yarl==1.18.3 ; python_version >= "3.10" and python_version < "4.0"