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  • 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

    Python Apache License 2.0 Updated Dec 28, 2021
  • Learn how to responsibly deliver value with ML.

    Jupyter Notebook MIT License Updated Oct 23, 2021
  • MLOps Public

    Forked from GokuMohandas/mlops-course

    A project-based course on the foundations of MLOps with a focus on intuition and application.

    Jupyter Notebook MIT License Updated Oct 23, 2021
  • cfDNA Sequencing Pipeline with UMI

    Python 2 MIT License Updated Aug 29, 2021
  • oh-my-zsh Public

    Forked from ohmyzsh/ohmyzsh

    A delightful community-driven (with 1,000+ contributors) framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc…

    Shell Other Updated Aug 29, 2021
  • facets-suite Public

    Forked from mskcc/facets-suite

    Utility functions for FACETS

    R Other Updated Aug 29, 2021
  • C++ GNU Lesser General Public License v3.0 Updated Aug 21, 2021
  • facets2n Public

    Forked from rptashkin/facets2n

    Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing. Package created to test FACETS with both matched and unmatched normal.

    R Updated Jul 24, 2021
  • data/scripts associated with somatic-germline manuscript

    Jupyter Notebook Updated Jun 11, 2021
  • Full reference of LinkedIn answers 2021 for skill assessments, LinkedIn test, questions and answers (aws-lambda, rest-api, javascript, react, git, html, jquery, mongodb, java, css, python, machine-…

    JavaScript GNU Affero General Public License v3.0 Updated May 28, 2021
  • xTea Public

    Forked from parklab/xTea

    Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

    Python Other Updated May 12, 2021
  • Random scripts shared within the team

    R Updated Aug 26, 2020
  • iAnnotateSV Public

    Forked from rhshah/iAnnotateSV

    iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.

    Python Apache License 2.0 Updated Aug 25, 2020
  • R Updated Aug 20, 2020
  • Python 1 2 MIT License Updated Jul 26, 2020
  • Coronavirus Disease 2019 (COVID-19) Clinical Data Repository

    Updated Apr 22, 2020
  • MONAI Public

    Forked from Project-MONAI/MONAI

    AI Toolkit for Healthcare Imaging

    Python Apache License 2.0 Updated Apr 22, 2020
  • Project to genotype SNV, INDEL and SV.

    Python Other Updated Feb 13, 2020
  • ensembl-vep Public

    Forked from Ensembl/ensembl-vep

    The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

    Perl Apache License 2.0 Updated Aug 15, 2019
  • Mini website for testing both general CS knowledge and enforce coding practice and common algorithm/data structure memorization.

    HTML Updated Aug 9, 2019
  • gym Public

    Forked from openai/gym

    A toolkit for developing and comparing reinforcement learning algorithms.

    Python Other Updated Jul 14, 2019
  • A collection of design patterns/idioms in Python

    Python Updated Jun 4, 2019
  • FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.

    Python Apache License 2.0 Updated May 31, 2019
  • vcf2maf Public

    Forked from mskcc/vcf2maf

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl Updated May 19, 2019
  • networkx Public

    Forked from networkx/networkx

    Official NetworkX source code repository.

    Python Other Updated May 19, 2019
  • edlib Public

    Forked from Martinsos/edlib

    Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

    C++ MIT License Updated May 4, 2019
  • tags reads in target bam based on other bam files

    Python MIT License Updated Apr 17, 2019
  • version-string management for VCS-controlled trees

    Python Updated Apr 4, 2019
  • biopython Public

    Forked from biopython/biopython

    Official git repository for Biopython (converted from CVS)

    Python Other Updated Mar 11, 2019
  • lz Public

    Forked from alreadydone/lz

    Go engine with no human-provided knowledge, modeled after the AlphaGo Zero paper.

    C++ GNU General Public License v3.0 Updated Mar 11, 2019