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Tree prior for cloneHD SNV mode#15

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ivazquez wants to merge 40 commits intoandrej-fischer:developandrej-fischer/cloneHD:developfrom ivazquez:tree-priorivazquez/cloneHD:tree-priorCopy head branch name to clipboard

+185,083-657

Commits

Commits on May 29, 2014

• Merge branch 'develop'

  andrej-fischer

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  8a4d7e8

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• mod run-example.sh

  andrej-fischer

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Commits on Jun 11, 2014

• Readme: Fix publication link

  juliangehring

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Commits on Jun 12, 2014

• Merge branch 'julian-gehring-patch-1'

  andrej-fischer

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Commits on Jun 20, 2014

• bug-001: seg-fault; edge case with a single SNV in a chromosome

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  andrej-fischer

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• Merge branch 'bug-001'

  andrej-fischer

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Commits on Jul 2, 2014

• added screenshots

  andrej-fischer

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• mod screenshots

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Commits on Jul 23, 2014

• mod Readme

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• mod Readme

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• mod Readme

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Commits on Jul 28, 2014

• mod README

  andrej-fischer

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  3b2c7c3

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• mod README

  andrej-fischer

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• mod README

  andrej-fischer

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Commits on Aug 5, 2014

• mod gitignore

  andrej-fischer

  committed
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• bug fixed on initial data set

  andrej-fischer

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Commits on Aug 6, 2014

• Merge branch 'bugfix-issue-7'

  andrej-fischer

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Commits on Jun 19, 2015

• mod README

  ivazquez

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Commits on Feb 19, 2016

• Compiler for compatibility with brew formula

  ivazquez

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Commits on Mar 7, 2016

• Remove hard links for GSL library

  ivazquez

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• Remove hard links for GSL library

  ivazquez

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Commits on Mar 8, 2016

• Merge branch 'smchet' of https://github.com/ivazquez/cloneHD into smchet

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Commits on Mar 18, 2016

• Simulated dataset for tests with run-example.sh

  ivazquez

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• Merge branch 'smchet' into develop

  ivazquez

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• Test compiler version for brew installation

  ivazquez

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Commits on Apr 17, 2016

• Remove hard-coded links to GSL

  ivazquez

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Commits on Apr 21, 2016

• Travis CI for continuous integration

  ivazquez

  committed
  1b7edc1

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• Fix .travis.yml syntax

  ivazquez

  committed
  d2f5845

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• Install GSL dependency in Travis CI

  ivazquez

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• No support for the clang compiler in Travis CI

  ivazquez

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• Fix default gcc on OSX, which is just a front-end for LLVM

  ivazquez

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• Fix indentation in .travis.yml

  ivazquez

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• Add Travis CI badge

  ivazquez

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• Change to watching the master branch only

  ivazquez

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• Fix Travis CI badge for all branches

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• Merge branch 'develop'

  ivazquez

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• gcc-4.8 is now preinstalled on Travis CI

  ivazquez

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• Merge branch 'develop'

  ivazquez

  committed
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• Travis CI for Linux (+7 squashed commits)

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  ivazquez

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Commits on Jun 8, 2016

• Implements tree-prior for cloneHD SNV-mode.

  vmustonen

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