branch cleaned

.Rhistory

@@ -1,19 +1,3 @@
-amin_get_random_forest_model <- get_random_forest_model(liver_om_lb_mi_tox_score_list, not_liver_om_lb_mi_tox_score_list)
-### ###########################-randomforestmodel-#############################
-rm(list = ls())
-devtools::load_all(".")
-# #Database Load
-dbtoken_liver <- sendigR::initEnvironment(dbType = 'sqlite',
-#dbPath = "/opt/rstudio/users/MdAminulIslam.Prodhan/DataCentral.db",
-dbPath = "C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/FAKE_DATABASES/liver_1.db",
-dbCreate = FALSE)
-# get the studies for the rat only species
-STUDYID_liver <- sendigR::genericQuery(dbtoken_liver, queryString = "SELECT DISTINCT STUDYID, DOMAIN
-FROM bw ", queryParams = NULL)
-selected_studies_liver <- as.vector(STUDYID_liver$STUDYID)
-Liver_get_liver_om_lb_mi_tox_score_list <- get_liver_om_lb_mi_tox_score_list  (selected_studies = selected_studies_liver,
-path_db = 'C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/FAKE_DATABASES/liver_1.db',
-fake_study = TRUE,
 use_xpt_file = FALSE,
 output_individual_scores = TRUE)
 dbtoken_not_liver <- sendigR::initEnvironment(dbType = 'sqlite',
@@ -510,3 +494,19 @@ rmarkdown::render("README.md")
 pkgdown::build_site()
 pkgdown::build_site()
 pkgdown::build_site()
+pkgdown::build_site()
+pkgdown::build_articles()
+pkgdown::build_articles()
+pkgdown::build_home()
+pkgdown::build_articles()
+usethis::use_vignette("vignette")
+pkgdown::build_site()
+?build_articles
+pkgdown::build_site()
+pkgdown::build_articles()
+usethis::use_vignette("introduction")  # This creates a vignette file and directory if it doesn't exist
+pkgdown::build_articles()
+pkgdown::build_site()
+devtools::document()
+devtools::document()
+devtools::check()

.Rproj.user/42540787/pcs/files-pane.pper

@@ -9,5 +9,5 @@
             "ascending": false
         }
     ],
-    "path": "C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/R"
+    "path": "C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR"
 }

.Rproj.user/42540787/pcs/source-pane.pper

@@ -1,3 +1,3 @@
 {
-    "activeTab": 3
+    "activeTab": -1
 }

.Rproj.user/42540787/pcs/windowlayoutstate.pper

@@ -1,13 +1,13 @@
 {
     "left": {
-        "splitterpos": 598,
+        "splitterpos": 742,
         "topwindowstate": "NORMAL",
         "panelheight": 868,
         "windowheight": 906
     },
     "right": {
-        "splitterpos": 362,
-        "topwindowstate": "NORMAL",
+        "splitterpos": 316,
+        "topwindowstate": "HIDE",
         "panelheight": 868,
         "windowheight": 906
     }

.Rproj.user/42540787/pcs/workbench-pane.pper

@@ -1,5 +1,5 @@
 {
-    "TabSet1": 4,
+    "TabSet1": 0,
     "TabSet2": 0,
     "TabZoom": {}
 }

.Rproj.user/42540787/sources/prop/8F4F9A0E

@@ -1,6 +1,6 @@
 {
     "source_window_id": "",
     "Source": "Source",
-    "cursorPosition": "3,0",
+    "cursorPosition": "5,0",
     "scrollLine": "0"
 }

.Rproj.user/42540787/sources/prop/C307A5DB

@@ -1,6 +1,6 @@
 {
     "source_window_id": "",
     "Source": "Source",
-    "cursorPosition": "238,0",
+    "cursorPosition": "277,0",
     "scrollLine": "0"
 }

.Rproj.user/42540787/sources/prop/INDEX

@@ -25,6 +25,7 @@ C%3A%2FUsers%2Fmdaminulisla.prodhan%2FOneDrive%20-%20FDA%2F2023-2024_projects%2F
 C%3A%2FUsers%2Fmdaminulisla.prodhan%2FOneDrive%20-%20FDA%2F2023-2024_projects%2FSENDQSAR%2FcompileData_with_helper_function.R="0D0E74B0"
 C%3A%2FUsers%2Fmdaminulisla.prodhan%2FOneDrive%20-%20FDA%2F2023-2024_projects%2FSENDQSAR%2Fdocs%2F404.html="2882ABC4"
 C%3A%2FUsers%2Fmdaminulisla.prodhan%2FOneDrive%20-%20FDA%2F2023-2024_projects%2FSENDQSAR%2Fdocs%2FNEWS.md.R="22D5F0A7"
+C%3A%2FUsers%2Fmdaminulisla.prodhan%2FOneDrive%20-%20FDA%2F2023-2024_projects%2FSENDQSAR%2Fdocs%2Farticles%2Fintroduction.html="404A0CFD"
 C%3A%2FUsers%2Fmdaminulisla.prodhan%2FOneDrive%20-%20FDA%2F2023-2024_projects%2FSENDQSAR%2Fdocs%2Findex.html="4D1223A6"
 C%3A%2FUsers%2Fmdaminulisla.prodhan%2FOneDrive%20-%20FDA%2F2023-2024_projects%2FSENDQSAR%2Fdocs%2Flightswitch.js="751EFEF7"
 C%3A%2FUsers%2Fmdaminulisla.prodhan%2FOneDrive%20-%20FDA%2F2023-2024_projects%2FSENDQSAR%2Fdocs%2Freference%2Findex.html="A14B1FD7"

.Rproj.user/shared/notebooks/paths

@@ -5,15 +5,17 @@ C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/.gitign
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/DESCRIPTION="E3E36280"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/NAMESPACE="B17A49F9"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/R/get_all_LBTESTCD_score.R="9F8513A5"
+C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/R/get_random_forest_model.R="E1785DA4"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/R/predicted_random_forest_model.R="5AB4CA03"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/README.Rmd="761D1203"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/README.md="DF50B07A"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/_pkgdown.yml="130C6ED2"
+C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/docs/articles/introduction.html="CAFED917"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/docs/index.html="1ED05607"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/docs/lightswitch.js="22068ECF"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/docs/reference/index.html="A549C85B"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/inst/testing_rscript.R="97E7BCF0"
+C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/testing_rscript.R="9CEB6626"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/vignettes/introduction.Rmd="876926E5"
-C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/SENDQSAR/vignettes/vignette.Rmd="51985487"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/send-summarizer/R/get_bw_score.R="416B4F0E"
 C:/Users/mdaminulisla.prodhan/OneDrive - FDA/2023-2024_projects/send-summarizer/R/get_liver_livertobw_score.R="AAF9A7B1"