yaml error check 6

DESCRIPTION

@@ -31,17 +31,14 @@ Imports:
     DBI,
     fs,
     dplyr,
-    magrittr,
-    purrr,
     randomForest,
-    repr,
     reshape2,
     ROCR,
     stringr,
     tidyr,
     ggplot2,
     matrixStats,
-    pkgdown
+    haven
 Suggests: 
     knitr,
     rmarkdown,

NEWS.md

@@ -4,3 +4,13 @@
 * Provides tools for building Quantitative Structure-Activity Relationship (QSAR) models leveraging the SEND database.
 * Includes functions for data acquisition, preprocessing, descriptor calculation, model training, and evaluation.
 * Features built-in tools for feature selection, visualization, and robust predictive modeling.
+# NEWS
+
+## [1.0.0] - 2024-10-02
+### Added
+- Initial release of the package with basic functionality.
+- Added function `my_function()` for data analysis.
+
+## [0.1.0] - 2024-09-15
+### Changed
+- Updated documentation for `my_function()`.

R/get_bw_score.R

@@ -6,6 +6,12 @@
 #'   path of database
 #' @param fake_study optional, Boolean \cr
 #' whether study generated by SENDsanitizer package
+#' @param use_xpt_file  Mandatory, character \cr
+#'   Studyid number
+#' @param master_compiledata Mandatory, character \cr
+#'   path of database
+#' @param return_individual_scores optional, Boolean \cr
+#' whether study generated by SENDsanitizer package
 #' @return dataframe
 #'
 #' @examples

R/get_compile_data.R

@@ -5,6 +5,8 @@
 #'   path of database
 #' @param fake_study optional, Boolean \cr
 #' whether study generated by SENDsanitizer package
+##' @param use_xpt_file optional, Boolean \cr
+#' whether study generated by SENDsanitizer package
 #' @return dataframe
 #'
 #' @examples

R/get_lb_score.R

@@ -6,6 +6,12 @@
 #'   path of database
 #' @param fake_study optional, Boolean \cr
 #' whether study generated by SENDsanitizer package
+#' @param use_xpt_file Mandatory, character \cr
+#'   Studyid number
+#' @param master_compiledata Mandatory, character \cr
+#'   path of database
+#' @param return_individual_scores optional, Boolean \cr
+#' whether study generated by SENDsanitizer package
 #' @return score
 #'
 #' @examples

R/get_mi_score.R

@@ -6,6 +6,12 @@
 #'   path of database
 #' @param fake_study optional, Boolean \cr
 #' whether study generated by SENDsanitizer package
+#' @param use_xpt_file Mandatory, character \cr
+#'   Studyid number
+#' @param master_compiledata Mandatory, character \cr
+#'   path of database
+#' @param return_individual_scores optional, Boolean \cr
+#' whether study generated by SENDsanitizer package
 #' @return score
 #'
 #' @examples

R/get_random_forest_model.R

@@ -1,8 +1,8 @@
 
 #' @title get_random_forest_model
-#' @param studyid Mandatory, character \cr
+#' @param Liver_get_liver_om_lb_mi_tox_score_list Mandatory, character \cr
 #'   Studyid number
-#' @param database_path Mandatory, character \cr
+#' @param not_Liver_get_liver_om_lb_mi_tox_score_list Mandatory, character \cr
 #'   path of database
 #' @return score
 #'
@@ -553,7 +553,7 @@ browser()
 
 ###-----------------------Visualization-and-Saving-Results----------------------
   # @Visualization-and-Saving-Results~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-  reprtree:::plot.reprtree(reprtree::ReprTree(rfAll, train, metric='d2'))
+  #reprtree:::plot.reprtree(reprtree::ReprTree(rfAll, train, metric='d2'))
 
   # saveRDS(rfData, paste0('rfData_', as.integer(reps), '_', threshold, '_', holdback, '_', ErrorMethod, '.rds'))