Update tests to expect a percentage in the CLI #14
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| name: Test | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| test_linux: | |
| name: Test (Linux) | |
| runs-on: ubuntu-latest | |
| env: | |
| OS: Linux | |
| strategy: | |
| matrix: | |
| include: | |
| - python-version: 3.7 | |
| python-release: v3.7 | |
| python-impl: CPython | |
| - python-version: 3.8 | |
| python-release: v3.8 | |
| python-impl: CPython | |
| - python-version: 3.9 | |
| python-release: v3.9 | |
| python-impl: CPython | |
| - python-version: '3.10' | |
| python-release: v3.10 | |
| python-impl: CPython | |
| - python-version: 3.11 | |
| python-release: v3.11 | |
| python-impl: CPython | |
| - python-version: 3.12 | |
| python-release: v3.12 | |
| python-impl: CPython | |
| - python-version: 3.13 | |
| python-release: v3.13 | |
| python-impl: CPython | |
| - python-version: pypy-3.7 | |
| python-release: v3.7 | |
| python-impl: PyPy | |
| - python-version: pypy-3.8 | |
| python-release: v3.8 | |
| python-impl: PyPy | |
| - python-version: pypy-3.9 | |
| python-release: v3.9 | |
| python-impl: PyPy | |
| - python-version: pypy-3.10 | |
| python-release: v3.10 | |
| python-impl: PyPy | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v1 | |
| - name: Install BLAST+ binaries | |
| run: sudo apt-get install ncbi-blast+ | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Update pip | |
| run: python -m pip install -U pip wheel setuptools | |
| - name: Install CI requirements | |
| run: python -m pip install coverage | |
| - name: Install library | |
| run: pip install . | |
| - name: Test with coverage | |
| run: python -m coverage run --source=orthoani -m unittest discover -v | |
| - name: Convert coverage report | |
| run: python -m coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| flags: ${{ matrix.python-impl }},${{ matrix.python-release }},${{ env.OS }} | |
| name: test-python-${{ matrix.python-version }} | |
| fail_ci_if_error: true | |
| token: ${{ secrets.CODECOV_TOKEN }} |