Merge pull request #609 from alliance-genome/HGVSp_unicode_fix

HGVSp unicode fix
alliance-genome · Aug 10, 2021 · 60ba8c0 · 60ba8c0
2 parents aae6435 + 89491fe
commit 60ba8c0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/etl/vep_transcript_etl.py b/src/etl/vep_transcript_etl.py
@@ -171,7 +171,7 @@ def get_generators(self, filepath, data_provider):  # noqa Needs simplyfying
                     if key == 'IMPACT':
                         impact = value
                     elif key == 'HGVSp':
-                        hgvs_p = value
+                        hgvs_p = value.replace("%3D", "=")
                     elif key == 'HGVSc':
                         hgvs_c = value
                     elif key == 'HGVSg':