Merge pull request #392 from alliance-genome/fix_error_handling

Fix error handling

src/aggregate_loader.py

@@ -1,9 +1,11 @@
 import logging, coloredlogs, os, multiprocessing, time, argparse, time
+
 from etl import *
 from etl.helpers import Neo4jHelper
 from transactors import Neo4jTransactor, FileTransactor
 from data_manager import DataFileManager
-from common import ContextInfo
+from common import ContextInfo # Must be the last timeport othersize program fails
+
 
 parser = argparse.ArgumentParser(description='Load data into the Neo4j database for the Alliance of Genome Resources.')
 parser.add_argument('-c', '--config', help='Specify the filename of the YAML config. It must reside in the src/config/ directory', default='default.yml')

src/etl/mi_etl.py

@@ -1,11 +1,13 @@
 import logging
-logger = logging.getLogger(__name__)
-
-import urllib, json, sys
+import urllib, json
 
 from etl import ETL
 from transactors import CSVTransactor, Neo4jTransactor
 
+logger = logging.getLogger(__name__)
+
+
+
 class MIETL(ETL):
 
     query_template = """

src/transactors/file_transactor.py

@@ -1,7 +1,9 @@
 import logging
 import multiprocessing
 from time import sleep
-from etl import *
+
+from etl import ETL
+
 
 logger = logging.getLogger(__name__)
 

src/transactors/neo4j_transactor.py

@@ -3,10 +3,11 @@
 import os
 import pickle
 import time
-from etl import *
 
 from neo4j.v1 import GraphDatabase
 
+from etl import ETL
+
 
 logger = logging.getLogger(__name__)