nmypy/flake 8 fixes

alliance-genome · Mar 21, 2023 · 19d0b70 · 19d0b70
1 parent 9d8b046
commit 19d0b70
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Showing 4 changed files with 5 additions and 8 deletions.
diff --git a/agr_literature_service/lit_processing/oneoff_scripts/update_reference_htmlentity.py b/agr_literature_service/lit_processing/oneoff_scripts/update_reference_htmlentity.py
@@ -55,10 +55,10 @@ def update_author_entity():
                     setattr(author_db_obj, key, value)
                     # print("will update key:" + key)
                 db_session.commit()
-                ref_db_obj = db_session.query(ReferenceModel).filter(ReferenceModel.reference_id == reference_id).first()
-                if ref_db_obj:
-                    curie = ref_db_obj.curie
-                    # update_citation(db_session, curie)
+                db_session.query(ReferenceModel).filter(ReferenceModel.reference_id == reference_id).first()
+                # if ref_db_obj:
+                #     curie = ref_db_obj.curie
+                #     update_citation(db_session, curie)
         db_session.close()
     except Exception as e:
         print('Error: ' + str(type(e)))

diff --git a/mypy.config b/mypy.config
@@ -1,3 +1,3 @@
 [mypy]
 ignore_missing_imports = True
-plugins = sqlalchemy.ext.mypy.plugin
+
diff --git a/requirements.dev.txt b/requirements.dev.txt
@@ -17,5 +17,4 @@ types-ujson
 types-docutils
 types-python-dateutil
 types-retry
-sqlalchemy[mypy]
 alembic_utils
diff --git a/requirements.txt b/requirements.txt
@@ -28,8 +28,6 @@ sqlalchemy_schemadisplay==1.3
 git+https://github.com/alliance-genome/[email protected]#egg=fastapi_okta
 requests
 
-sqlalchemy[mypy]
-
 # xml_processing
 bs4==0.0.1