Merge branch 'main' into SCRUM-4802 #4732
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| name: unittest | |
| on: [push] | |
| jobs: | |
| run-unittests: | |
| permissions: | |
| id-token: write # This is required for requesting the JWT for gaining permissions to assume the IAM role to perform AWS actions | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.head_ref }} | |
| - uses: actions/setup-python@v4 | |
| name: setup python | |
| with: | |
| python-version: 3.11 | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install -r requirements.dev.txt | |
| - name: AWS credentials configuration | |
| uses: aws-actions/configure-aws-credentials@v2 | |
| with: | |
| role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}} | |
| role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-unittest | |
| aws-region: us-east-1 | |
| - name: Amazon ECR login | |
| id: login-ecr | |
| uses: aws-actions/amazon-ecr-login@v1 | |
| - name: run unit tests | |
| env: | |
| ENV_STATE: test | |
| HOST: 0.0.0.0 | |
| PSQL_USERNAME: postgres | |
| PSQL_PASSWORD: postgres | |
| PSQL_HOST: localhost | |
| PSQL_PORT: 5432 | |
| PSQL_DATABASE: literature-test | |
| PYTHONPATH: agr_literature_service/lit_processing/ | |
| OKTA_DOMAIN: 'dev-30456587.okta.com/oauth2/default' | |
| OKTA_API_AUDIENCE: 'api://default' | |
| RESOURCE_DESCRIPTOR_URL: 'https://raw.githubusercontent.com/alliance-genome/agr_schemas/master/resourceDescriptors.yaml' | |
| ELASTICSEARCH_HOST: localhost | |
| ELASTICSEARCH_PORT: 9200 | |
| ELASTICSEARCH_INDEX: references_index | |
| XML_PATH: ${GITHUB_WORKSPACE}/tests/tmp/ | |
| OKTA_CLIENT_ID: ${{ secrets.okta_client_id }} | |
| OKTA_CLIENT_SECRET: ${{ secrets.okta_client_secret }} | |
| run: | | |
| docker compose --env-file .env.test down -v | |
| docker compose --env-file .env.test up -d postgres | |
| sleep 5 | |
| docker compose --env-file .env.test up -d elasticsearch | |
| sleep 10 | |
| pytest -m "not webtest" | |
| docker compose --env-file .env.test down -v |