Added persistent store vars to automated scripts #4571
Workflow file for this run
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| name: functest | |
| on: [push] | |
| jobs: | |
| run-functests: | |
| permissions: | |
| id-token: write # This is required for requesting the JWT for gaining permissions to assume the IAM role to perform AWS actions | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.head_ref }} | |
| - uses: actions/setup-python@v4 | |
| name: setup python | |
| with: | |
| python-version: 3.8 | |
| - name: AWS credentials configuration | |
| uses: aws-actions/configure-aws-credentials@v2 | |
| with: | |
| role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}} | |
| role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-functest | |
| aws-region: us-east-1 | |
| - name: Amazon ECR login | |
| id: login-ecr | |
| uses: aws-actions/amazon-ecr-login@v1 | |
| - name: run func tests | |
| env: | |
| ENV_STATE: test | |
| HOST: 0.0.0.0 | |
| PSQL_USERNAME: postgres | |
| PSQL_PASSWORD: postgres | |
| PSQL_HOST: postgres | |
| PSQL_PORT: 5433 | |
| PSQL_DATABASE: literature-test | |
| OKTA_CLIENT_ID: ${{ secrets.okta_client_id }} | |
| OKTA_CLIENT_SECRET: ${{ secrets.okta_client_secret }} | |
| RESOURCE_DESCRIPTOR_URL: 'https://raw.githubusercontent.com/alliance-genome/agr_schemas/master/resourceDescriptors.yaml' | |
| OKTA_DOMAIN: 'dev-30456587.okta.com/oauth2/default' | |
| OKTA_API_AUDIENCE: 'api://default' | |
| run: | | |
| docker compose --env-file .env.test down | |
| docker compose --env-file .env.test up -d postgres | |
| sleep 5 | |
| docker compose --env-file .env.test build test_runner | |
| docker compose --env-file .env.test build dev_app | |
| docker compose --env-file .env.test run --rm dev_app sh tests/init_test_db.sh | |
| docker compose --env-file .env.test run test_runner python3 agr_literature_service/lit_processing/tests/functional_tests.py | |
| docker compose --env-file .env.test down |