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Merge pull request #43 from alliance-genome/SCRUM-249_JSON_test_files
SCRUM-249 initial commit of JSON test files for gene loading
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,59 @@ | ||
| { | ||
| "data" : [ | ||
| { | ||
| "basicGeneticEntity" : { | ||
| "crossReferences" : [ | ||
| { | ||
| "id" : "TEST:xref1a" | ||
| }, | ||
| { | ||
| "id" : "TEST:xref1b", | ||
| "pages" : [ | ||
| "gene", | ||
| "gene/references", | ||
| "gene/expression", | ||
| "gene/expression_images", | ||
| "gene/phenotype" | ||
| ] | ||
| }, | ||
| ], | ||
| "genomeLocations" : [ | ||
| { | ||
| "assembly" : "TEST_assembly", | ||
| "chromosome" : "1", | ||
| "endPosition" : 100, | ||
| "startPosition" : 1, | ||
| "strand" : "+" | ||
| } | ||
| ], | ||
| "primaryId" : "TEST:TestGene00001", | ||
| "secondaryIds" : [ | ||
| "TEST:TG00001" | ||
| ], | ||
| "synonyms" : [ | ||
| "Test1", | ||
| "ExampleGene1" | ||
| ], | ||
| "taxonId" : "NCBITaxon:10090" | ||
| }, | ||
| "geneSynopsis" : "Test gene with all fields populated", | ||
| "geneSynopsisUrl" : "http://test.org/test_synopsis_1", | ||
| "name" : "Test gene 1", | ||
| "soTermId" : "SO:0001217", | ||
| "symbol" : "Tg1" | ||
| } | ||
| ], | ||
| "metaData" : { | ||
| "dataProvider" : { | ||
| "crossReference" : { | ||
| "id" : "TEST", | ||
| "pages" : [ | ||
| "homepage" | ||
| ] | ||
| }, | ||
| "type" : "curated" | ||
| }, | ||
| "dateProduced" : "2021-09-13T12:39:18+01:00", | ||
| "release" : "TEST" | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| { | ||
| "data" : [ | ||
| { | ||
| "basicGeneticEntity" : { | ||
| "genomeLocations" : [ | ||
| { | ||
| "assembly" : "TEST_assembly", | ||
| "chromosome" : "2", | ||
| "endPosition" : 100, | ||
| "startPosition" : 1, | ||
| "strand" : "+" | ||
| } | ||
| ], | ||
| "primaryId" : "TEST:TestGene00002", | ||
| "secondaryIds" : [ | ||
| "TEST:TG00002" | ||
| ], | ||
| "synonyms" : [ | ||
| "Test2", | ||
| "ExampleGene2" | ||
| ], | ||
| "taxonId" : "NCBITaxon:10090" | ||
| }, | ||
| "geneSynopsis" : "Test gene with all fields populated except crossReferences", | ||
| "geneSynopsisUrl" : "http://test.org/test_synopsis_2", | ||
| "name" : "Test gene 2", | ||
| "soTermId" : "SO:0001217", | ||
| "symbol" : "Tg2" | ||
| } | ||
| ], | ||
| "metaData" : { | ||
| "dataProvider" : { | ||
| "crossReference" : { | ||
| "id" : "TEST", | ||
| "pages" : [ | ||
| "homepage" | ||
| ] | ||
| }, | ||
| "type" : "curated" | ||
| }, | ||
| "dateProduced" : "2021-09-13T12:39:18+01:00", | ||
| "release" : "TEST" | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,50 @@ | ||
| { | ||
| "data" : [ | ||
| { | ||
| "basicGeneticEntity" : { | ||
| "crossReferences" : [ | ||
| { | ||
| "id" : "TEST:xref3a" | ||
| }, | ||
| { | ||
| "id" : "TEST:xref3b", | ||
| "pages" : [ | ||
| "gene", | ||
| "gene/references", | ||
| "gene/expression", | ||
| "gene/expression_images", | ||
| "gene/phenotype" | ||
| ] | ||
| }, | ||
| ], | ||
| "primaryId" : "TEST:TestGene00003", | ||
| "secondaryIds" : [ | ||
| "TEST:TG00003" | ||
| ], | ||
| "synonyms" : [ | ||
| "Test3", | ||
| "ExampleGene3" | ||
| ], | ||
| "taxonId" : "NCBITaxon:10090" | ||
| }, | ||
| "geneSynopsis" : "Test gene with all fields populated except genomeLocations", | ||
| "geneSynopsisUrl" : "http://test.org/test_synopsis_3", | ||
| "name" : "Test gene 3", | ||
| "soTermId" : "SO:0001217", | ||
| "symbol" : "Tg3" | ||
| } | ||
| ], | ||
| "metaData" : { | ||
| "dataProvider" : { | ||
| "crossReference" : { | ||
| "id" : "TEST", | ||
| "pages" : [ | ||
| "homepage" | ||
| ] | ||
| }, | ||
| "type" : "curated" | ||
| }, | ||
| "dateProduced" : "2021-09-13T12:39:18+01:00", | ||
| "release" : "TEST" | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,58 @@ | ||
| { | ||
| "data" : [ | ||
| { | ||
| "basicGeneticEntity" : { | ||
| "crossReferences" : [ | ||
| { | ||
| "id" : "TEST:xref4a" | ||
| }, | ||
| { | ||
| "id" : "TEST:xref4b", | ||
| "pages" : [ | ||
| "gene", | ||
| "gene/references", | ||
| "gene/expression", | ||
| "gene/expression_images", | ||
| "gene/phenotype" | ||
| ] | ||
| }, | ||
| ], | ||
| "genomeLocations" : [ | ||
| { | ||
| "assembly" : "TEST_assembly", | ||
| "chromosome" : "4", | ||
| "endPosition" : 100, | ||
| "startPosition" : 1, | ||
| "strand" : "+" | ||
| } | ||
| ], | ||
| "secondaryIds" : [ | ||
| "TEST:TG00004" | ||
| ], | ||
| "synonyms" : [ | ||
| "Test4", | ||
| "ExampleGene4" | ||
| ], | ||
| "taxonId" : "NCBITaxon:10090" | ||
| }, | ||
| "geneSynopsis" : "Test gene with all fields populated except primaryId", | ||
| "geneSynopsisUrl" : "http://test.org/test_synopsis_4", | ||
| "name" : "Test gene 4", | ||
| "soTermId" : "SO:0001217", | ||
| "symbol" : "Tg4" | ||
| } | ||
| ], | ||
| "metaData" : { | ||
| "dataProvider" : { | ||
| "crossReference" : { | ||
| "id" : "TEST", | ||
| "pages" : [ | ||
| "homepage" | ||
| ] | ||
| }, | ||
| "type" : "curated" | ||
| }, | ||
| "dateProduced" : "2021-09-13T12:39:18+01:00", | ||
| "release" : "TEST" | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,56 @@ | ||
| { | ||
| "data" : [ | ||
| { | ||
| "basicGeneticEntity" : { | ||
| "crossReferences" : [ | ||
| { | ||
| "id" : "TEST:xref5a" | ||
| }, | ||
| { | ||
| "id" : "TEST:xref5b", | ||
| "pages" : [ | ||
| "gene", | ||
| "gene/references", | ||
| "gene/expression", | ||
| "gene/expression_images", | ||
| "gene/phenotype" | ||
| ] | ||
| }, | ||
| ], | ||
| "genomeLocations" : [ | ||
| { | ||
| "assembly" : "TEST_assembly", | ||
| "chromosome" : "5", | ||
| "endPosition" : 100, | ||
| "startPosition" : 1, | ||
| "strand" : "+" | ||
| } | ||
| ], | ||
| "primaryId" : "TEST:TestGene00005", | ||
| "synonyms" : [ | ||
| "Test5", | ||
| "ExampleGene5" | ||
| ], | ||
| "taxonId" : "NCBITaxon:10090" | ||
| }, | ||
| "geneSynopsis" : "Test gene with all fields populated except secondaryIds", | ||
| "geneSynopsisUrl" : "http://test.org/test_synopsis_5", | ||
| "name" : "Test gene 5", | ||
| "soTermId" : "SO:0001217", | ||
| "symbol" : "Tg5" | ||
| } | ||
| ], | ||
| "metaData" : { | ||
| "dataProvider" : { | ||
| "crossReference" : { | ||
| "id" : "TEST", | ||
| "pages" : [ | ||
| "homepage" | ||
| ] | ||
| }, | ||
| "type" : "curated" | ||
| }, | ||
| "dateProduced" : "2021-09-13T12:39:18+01:00", | ||
| "release" : "TEST" | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| { | ||
| "data" : [ | ||
| { | ||
| "basicGeneticEntity" : { | ||
| "crossReferences" : [ | ||
| { | ||
| "id" : "TEST:xref6a" | ||
| }, | ||
| { | ||
| "id" : "TEST:xref6b", | ||
| "pages" : [ | ||
| "gene", | ||
| "gene/references", | ||
| "gene/expression", | ||
| "gene/expression_images", | ||
| "gene/phenotype" | ||
| ] | ||
| }, | ||
| ], | ||
| "genomeLocations" : [ | ||
| { | ||
| "assembly" : "TEST_assembly", | ||
| "chromosome" : "6", | ||
| "endPosition" : 100, | ||
| "startPosition" : 1, | ||
| "strand" : "+" | ||
| } | ||
| ], | ||
| "primaryId" : "TEST:TestGene00006", | ||
| "secondaryIds" : [ | ||
| "TEST:TG00006" | ||
| ], | ||
| "taxonId" : "NCBITaxon:10090" | ||
| }, | ||
| "geneSynopsis" : "Test gene with all fields populated except synonyms", | ||
| "geneSynopsisUrl" : "http://test.org/test_synopsis_6", | ||
| "name" : "Test gene 6", | ||
| "soTermId" : "SO:0001217", | ||
| "symbol" : "Tg6" | ||
| } | ||
| ], | ||
| "metaData" : { | ||
| "dataProvider" : { | ||
| "crossReference" : { | ||
| "id" : "TEST", | ||
| "pages" : [ | ||
| "homepage" | ||
| ] | ||
| }, | ||
| "type" : "curated" | ||
| }, | ||
| "dateProduced" : "2021-09-13T12:39:18+01:00", | ||
| "release" : "TEST" | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,58 @@ | ||
| { | ||
| "data" : [ | ||
| { | ||
| "basicGeneticEntity" : { | ||
| "crossReferences" : [ | ||
| { | ||
| "id" : "TEST:xref7a" | ||
| }, | ||
| { | ||
| "id" : "TEST:xref7b", | ||
| "pages" : [ | ||
| "gene", | ||
| "gene/references", | ||
| "gene/expression", | ||
| "gene/expression_images", | ||
| "gene/phenotype" | ||
| ] | ||
| }, | ||
| ], | ||
| "genomeLocations" : [ | ||
| { | ||
| "assembly" : "TEST_assembly", | ||
| "chromosome" : "7", | ||
| "endPosition" : 100, | ||
| "startPosition" : 1, | ||
| "strand" : "+" | ||
| } | ||
| ], | ||
| "primaryId" : "TEST:TestGene00007", | ||
| "secondaryIds" : [ | ||
| "TEST:TG00007" | ||
| ], | ||
| "synonyms" : [ | ||
| "Test7", | ||
| "ExampleGene7" | ||
| ], | ||
| }, | ||
| "geneSynopsis" : "Test gene with all fields populated except taxonId", | ||
| "geneSynopsisUrl" : "http://test.org/test_synopsis_7", | ||
| "name" : "Test gene 7", | ||
| "soTermId" : "SO:0001217", | ||
| "symbol" : "Tg7" | ||
| } | ||
| ], | ||
| "metaData" : { | ||
| "dataProvider" : { | ||
| "crossReference" : { | ||
| "id" : "TEST", | ||
| "pages" : [ | ||
| "homepage" | ||
| ] | ||
| }, | ||
| "type" : "curated" | ||
| }, | ||
| "dateProduced" : "2021-09-13T12:39:18+01:00", | ||
| "release" : "TEST" | ||
| } | ||
| } |
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