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add R4B again #265
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@oliveregger
oliveregger committed Sep 10, 2024
1 parent d6c2034 commit 0a6ddb2
Showing 1 changed file with 88 additions and 74 deletions.
162 changes: 88 additions & 74 deletions matchbox-engine/src/test/java/ch/ahdis/matchbox/engine/tests/FhirXVersTests.java
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Original file line number Diff line number Diff line change
Expand Up @@ -54,33 +54,32 @@
*/
class FhirXVersTests {

// static private MatchboxEngine engineR4B;
static private MatchboxEngine engineR4B;
static private MatchboxEngine engineR4, engineR5;

private static final org.slf4j.Logger log = org.slf4j.LoggerFactory.getLogger(FhirMappingLanguageTests.class);

@BeforeAll
static void setUpBeforeClass() throws Exception {
engineR4 = new MatchboxEngineBuilder().withXVersion(true).getEngineR4();
// engineR4B = new MatchboxEngineBuilder().getEngineR4B();
engineR4B = new MatchboxEngineBuilder().withXVersion(true).getEngineR4B();
engineR5 = new MatchboxEngineBuilder().withXVersion(true).getEngineR5();
// optional, just for peformance reason
// engineR4.cacheXVersionEngine(engineR4B);
// optional, just for peformance reason
engineR4.cacheXVersionEngine(engineR4B);
engineR4.cacheXVersionEngine(engineR5);
// engineR4B.cacheXVersionEngine(engineR4);
// engineR4B.cacheXVersionEngine(engineR5);
engineR4B.cacheXVersionEngine(engineR4);
engineR4B.cacheXVersionEngine(engineR5);
engineR5.cacheXVersionEngine(engineR4);
// engineR5.cacheXVersionEngine(engineR4B);
engineR5.cacheXVersionEngine(engineR4B);
}

@AfterAll
static void teardownClass() throws Exception {
engineR4 = null;
engineR5 = null;
// egnineR4B = null;
engineR4B = null;
CompareUtil.logMemory();
}


@BeforeEach
void setUp() throws Exception {
Expand All @@ -99,12 +98,15 @@ public StructureDefinition getStructureDefinitionFromFile(String file) throws IO
@Test
void testMedication5to4inR4() throws FHIRException, IOException {
MatchboxEngine engine = FhirXVersTests.engineR4;
assertEquals("4.0.1",engine.getVersion());
assertEquals("4.0.1",engine.getContext().getVersion());
assertEquals("4.0.1", engine.getVersion());
assertEquals("4.0.1", engine.getContext().getVersion());
SimpleWorkerContext context = engine.getContext();
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class, "http://hl7.org/fhir/StructureDefinition/Patient"));
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class, "http://terminology.hl7.org/CodeSystem/v3-ActCode"));
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class, "http://hl7.org/fhir/uv/xver/StructureMap/Medication4to5"));
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class,
"http://hl7.org/fhir/StructureDefinition/Patient"));
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class,
"http://terminology.hl7.org/CodeSystem/v3-ActCode"));
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication4to5"));

String result = engine.transform(getFileAsStringFromResources("/medication-r5-med0301.json"), true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4", true);
Expand All @@ -113,96 +115,108 @@ void testMedication5to4inR4() throws FHIRException, IOException {
CompareUtil.logMemory();
}

// @Test
// void testMedication5to4inR4B() throws FHIRException, IOException {
// MatchboxEngine engine =FhirXVersTests.engineR4B;
// assertEquals("4.3.0",engine.getVersion());
// assertEquals("4.3.0",engine.getContext().getVersion());
// assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class, "http://hl7.org/fhir/StructureDefinition/Patient"));
// assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class, "http://hl7.org/fhir/uv/xver/StructureMap/Medication4to5"));
// String result = engine.transform(getFileAsStringFromResources("/medication-r5-med0301.json"), true,
// "http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4", true);
// log.info(result);
// CompareUtil.compare(getFileAsStringFromResources("/medication-r4-med0301.json"), result, false);
// }
//
// @Test
// void testMedication5to4BinR4B() throws FHIRException, IOException {
// MatchboxEngine engine =FhirXVersTests.engineR4B;
// String result = engine.transform(getFileAsStringFromResources("/medication-r5-med0301.json"), true,
// "http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4b", true);
// log.info(result);
// CompareUtil.compare(getFileAsStringFromResources("/medication-r4b-med0301.json"), result, false);
// }
@Test
void testMedication5to4inR4B() throws FHIRException, IOException {
MatchboxEngine engine = FhirXVersTests.engineR4B;
SimpleWorkerContext context = engine.getContext();
assertEquals("4.3.0", engine.getVersion());
assertEquals("4.3.0", engine.getContext().getVersion());
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class,
"http://hl7.org/fhir/StructureDefinition/Patient"));
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4"));
String result = engine.transform(getFileAsStringFromResources("/medication-r5-med0301.json"), true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4", true);
log.info(result);
CompareUtil.compare(getFileAsStringFromResources("/medication-r4-med0301.json"), result, false);
}

@Test
void testMedication5to4BinR4B() throws FHIRException, IOException {
MatchboxEngine engine = FhirXVersTests.engineR4B;
String result = engine.transform(getFileAsStringFromResources("/medication-r5-med0301.json"), true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4b", true);
log.info(result);
CompareUtil.compare(getFileAsStringFromResources("/medication-r4b-med0301.json"), result, false);
}

@Test
void testMedication5to4inR5() throws FHIRException, IOException {
MatchboxEngine engine =FhirXVersTests.engineR5;
MatchboxEngine engine = FhirXVersTests.engineR5;
SimpleWorkerContext context = engine.getContext();
log.info("finished TestEngineR5");
assertEquals("5.0.0",engine.getVersion());
assertEquals("5.0.0",engine.getContext().getVersion());
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class, "http://hl7.org/fhir/StructureDefinition/Patient"));
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class, "http://hl7.org/fhir/uv/xver/StructureMap/Medication4to5"));
assertEquals("5.0.0", engine.getVersion());
assertEquals("5.0.0", engine.getContext().getVersion());
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class,
"http://hl7.org/fhir/StructureDefinition/Patient"));
assertNotNull(context.fetchResource(org.hl7.fhir.r5.model.Resource.class,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4"));
String result = engine.transform(getFileAsStringFromResources("/medication-r5-med0301.json"), true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4", true);
log.info(result);
CompareUtil.compare(getFileAsStringFromResources("/medication-r4-med0301.json"), result, false);
CompareUtil.logMemory();
}

// @Test
// void testMedication5to4BinR5() throws FHIRException, IOException {
// MatchboxEngine engine =FhirXVersTests.engineR5;
// String result = engine.transform(getFileAsStringFromResources("/medication-r5-med0301.json"), true,
// "http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4b", true);
// log.info(result);
// CompareUtil.compare(getFileAsStringFromResources("/medication-r4b-med0301.json"), result, false);
// }
@Test
void testMedication5to4BinR5() throws FHIRException, IOException {
MatchboxEngine engine = FhirXVersTests.engineR5;
String result = engine.transform(getFileAsStringFromResources("/medication-r5-med0301.json"),
true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication5to4b", true);
log.info(result);
CompareUtil.compare(getFileAsStringFromResources("/medication-r4b-med0301.json"),
result, false);
}

@Test
void testMedication4to5inR4() throws FHIRException, IOException {
MatchboxEngine engine =FhirXVersTests.engineR4;
MatchboxEngine engine = FhirXVersTests.engineR4;
String result = engine.transform(getFileAsStringFromResources("/medication-r4-med0301.json"), true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication4to5", true);
log.info(result);
CompareUtil.compare(getFileAsStringFromResources("/medication-r5-med0301.json"), result, false);
CompareUtil.logMemory();
}

// @Test
// void testMedication4to5inR4B() throws FHIRException, IOException {
// MatchboxEngine engine =FhirXVersTests.engineR4B;
// String result = engine.transform(getFileAsStringFromResources("/medication-r4-med0301.json"), true,
// "http://hl7.org/fhir/uv/xver/StructureMap/Medication4to5", true);
// CompareUtil.compare(getFileAsStringFromResources("/medication-r5-med0301.json"), result, false);
// }
//
// @Test
// void testMedication4Bto5inR4B() throws FHIRException, IOException {
// MatchboxEngine engine =FhirXVersTests.engineR4B;
// String result = engine.transform(getFileAsStringFromResources("/medication-r4b-med0301.json"), true,
// "http://hl7.org/fhir/uv/xver/StructureMap/Medication4Bto5", true);
// CompareUtil.compare(getFileAsStringFromResources("/medication-r5-med0301.json"), result, false);
// }
@Test
void testMedication4to5inR4B() throws FHIRException, IOException {
MatchboxEngine engine = FhirXVersTests.engineR4B;
String result = engine.transform(getFileAsStringFromResources("/medication-r4-med0301.json"),
true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication4to5", true);
CompareUtil.compare(getFileAsStringFromResources("/medication-r5-med0301.json"),
result, false);
}

@Test
void testMedication4Bto5inR4B() throws FHIRException, IOException {
MatchboxEngine engine = FhirXVersTests.engineR4B;
String result = engine.transform(getFileAsStringFromResources("/medication-r4b-med0301.json"),
true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication4Bto5", true);
CompareUtil.compare(getFileAsStringFromResources("/medication-r5-med0301.json"),
result, false);
}

@Test
void testMedication4to5inR5() throws FHIRException, IOException {
MatchboxEngine engine =FhirXVersTests.engineR5;
MatchboxEngine engine = FhirXVersTests.engineR5;
String result = engine.transform(getFileAsStringFromResources("/medication-r4-med0301.json"), true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication4to5", true);
log.info(result);
CompareUtil.compare(getFileAsStringFromResources("/medication-r5-med0301.json"), result, false);
CompareUtil.logMemory();
}

// @Test
// void testMedication4Bto5inR5() throws FHIRException, IOException {
// MatchboxEngine engine =FhirXVersTests.engineR5;
// String result = engine.transform(getFileAsStringFromResources("/medication-r4b-med0301.json"), true,
// "http://hl7.org/fhir/uv/xver/StructureMap/Medication4Bto5", true);
// CompareUtil.compare(getFileAsStringFromResources("/medication-r5-med0301.json"), result, false);
// }

@Test
void testMedication4Bto5inR5() throws FHIRException, IOException {
MatchboxEngine engine = FhirXVersTests.engineR5;
String result = engine.transform(getFileAsStringFromResources("/medication-r4b-med0301.json"),
true,
"http://hl7.org/fhir/uv/xver/StructureMap/Medication4Bto5", true);
CompareUtil.compare(getFileAsStringFromResources("/medication-r5-med0301.json"),
result, false);
}

}

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