Fixed JS links to jQuery and MathJax. #37
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| name: build-crux-distributions | |
| on: | |
| push: | |
| branches: master | |
| workflow_dispatch: | |
| env: | |
| BUILD_TYPE: Release | |
| jobs: | |
| build-macos-windows-distributions: | |
| strategy: | |
| matrix: | |
| os: [macos-latest, windows-2019] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: checkout-repository | |
| uses: actions/checkout@v3 | |
| - name: add-short-sha | |
| shell: bash | |
| run: | | |
| echo "git_short_sha=`git rev-parse --short HEAD`" >> $GITHUB_ENV | |
| - name: setup-python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.x | |
| - name: configure-build-for-macos | |
| if: matrix.os == 'macos-latest' | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip numpy pandas | |
| brew install cucumber-ruby | |
| cmake -E make_directory "${{runner.workspace}}/build" | |
| cd "${{runner.workspace}}/build" | |
| echo Configuring in $(pwd) | |
| cmake "${{github.workspace}}" -DCMAKE_BUILD_TYPE=$BUILD_TYPE | |
| - name: configure-build-for-windows-2019 | |
| if: matrix.os == 'windows-2019' | |
| shell: cmd | |
| run: | | |
| cmake -E make_directory "${{runner.workspace}}/build" | |
| cd "${{runner.workspace}}/build" | |
| C:\msys64\usr\bin\wget.exe wget http://noble.gs.washington.edu/crux-downloads/Thermo.zip | |
| unzip -P iacceptthelicense Thermo.zip -d dlls | |
| echo "XRawfile2_x64.dll" | |
| regsvr32 /S dlls\Thermo\MSFileReader\XRawfile2_x64.dll | |
| echo "fregistry_x64.dll" | |
| regsvr32 /S dlls\Thermo\MSFileReader\fregistry_x64.dll | |
| echo "Fileio_x64.dll.dll" | |
| regsvr32 /S dlls\Thermo\MSFileReader\Fileio_x64.dll.dll | |
| cmake "${{github.workspace}}" -G "Visual Studio 16 2019" -A x64 -DPERCOLATOR_GIT_VERSION=e806a0c | |
| - name: build-on-macos-and-windows | |
| shell: bash | |
| run: | | |
| cd "${{runner.workspace}}/build" | |
| echo Building in $(pwd) | |
| cmake --build . --config $BUILD_TYPE | |
| - name: build-package-macos-windows-packages | |
| shell: bash | |
| run: | | |
| cd "${{runner.workspace}}/build" | |
| cmake --build . --config $BUILD_TYPE --target package | |
| - name: archive-macos-package | |
| if: matrix.os == 'macos-latest' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: crux-4.1.${{env.git_short_sha}}.macos | |
| path: ${{runner.workspace}}/build/crux-4.1.Darwin.x86_64.zip | |
| - name: archive-windows-package | |
| if: matrix.os == 'windows-2019' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: crux-4.1.${{env.git_short_sha}}.windows | |
| path: ${{runner.workspace}}/build/crux-4.1.Windows.i386.zip | |
| build-crux-on-centos-7: | |
| runs-on: 'ubuntu-latest' | |
| container: 'centos:centos7' | |
| needs: build-macos-windows-distributions | |
| steps: | |
| - name: Install prerequisites for Docker Centos 7 | |
| shell: bash | |
| run: | | |
| yum -y update | |
| yum -y install https://packages.endpointdev.com/rhel/7/os/x86_64/endpoint-repo.x86_64.rpm | |
| yum -y install epel-release | |
| yum -y install git | |
| git --version | |
| yum -y install lbzip2 | |
| yum -y install cmake3 | |
| yum -y install centos-release-scl | |
| yum-config-manager --enable rhel-server-rhscl-7-rpms | |
| yum -y install devtoolset-8 | |
| yum -y install rh-python36 | |
| yum -y install rh-ruby27 | |
| yum -y install rh-ruby27-ruby-devel | |
| yum -y install gem | |
| scl enable devtoolset-8 rh-ruby27 'gcc --version' | |
| scl enable rh-python36 'python --version' | |
| scl enable rh-python36 'python -m pip install --upgrade pip numpy pandas' | |
| scl enable rh-ruby27 'gem install cucumber rspec' | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: add-short-sha env property | |
| shell: bash | |
| run: | | |
| git config --global --add safe.directory /__w/crux-toolkit/crux-toolkit | |
| echo git_short_sha=$(git rev-parse --short HEAD) >> $GITHUB_ENV | |
| echo "${{github.workspace}}" | |
| - name: Configure and build on Centos | |
| shell: bash | |
| run: | | |
| echo $(pwd) | |
| ls doc/user/*.html | |
| scl enable devtoolset-8 "cmake3 -DCMAKE_BUILD_TYPE=$BUILD_TYPE ." | |
| scl enable devtoolset-8 "cmake3 --build . --config $BUILD_TYPE" | |
| - name: Test | |
| shell: bash | |
| run: | | |
| cd test/smoke-tests | |
| scl enable rh-python36 rh-ruby27 'cucumber --publish-quiet --tags "not @ignore" -f html -o smoke-tests.html' | |
| - name: Build binary and source packages | |
| shell: bash | |
| run: | | |
| cmake3 --build . --config $BUILD_TYPE --target package | |
| cmake3 --build . --config $BUILD_TYPE --target package_source | |
| - name: Archive Centos 7 binary package | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: crux-4.1.${{env.git_short_sha}}.centos7 | |
| path: crux-4.1.Linux.x86_64.zip | |
| - name: Archive source package | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: crux-4.1.${{env.git_short_sha}}.Source | |
| path: crux-4.1.Source.tar.gz | |
| - name: Archive smoke test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: smoke.html | |
| path: test/smoke-tests/smoke-tests.html | |
| - name: Create version file | |
| shell: bash | |
| run: | | |
| echo ${{env.git_short_sha}} > doc/user/latest-build.txt | |
| - name: Push modified webpages to website repository | |
| if: github.ref == 'refs/heads/master' | |
| uses: nkoppel/[email protected] | |
| env: | |
| API_TOKEN_GITHUB: ${{ secrets.DOC_UPDATE_KEY}} | |
| with: | |
| source-files: 'doc/user/*' | |
| destination-username: 'crux-toolkit' | |
| destination-repository: 'crux-toolkit.github.io' | |
| destination-directory: '.' | |
| commit-email: '[email protected]' | |
| - name: Push command webpages to website repository | |
| uses: dmnemec/copy_file_to_another_repo_action@main | |
| env: | |
| API_TOKEN_GITHUB: ${{ secrets.DOC_UPDATE_KEY }} | |
| with: | |
| source_file: 'doc/user/commands/' | |
| destination_repo: 'crux-toolkit/crux-toolkit.github.io' | |
| destination_branch: master | |
| destination_folder: '.' | |
| user_email: '[email protected]' | |
| user_name: 'CharlesEGrant' | |
| commit_message: 'Update version file for the web site' | |
| - name: Copy version file to website repository | |
| uses: dmnemec/copy_file_to_another_repo_action@main | |
| env: | |
| API_TOKEN_GITHUB: ${{ secrets.DOC_UPDATE_KEY }} | |
| with: | |
| source_file: 'doc/user/latest-build.txt' | |
| destination_repo: 'crux-toolkit/crux-toolkit.github.io' | |
| destination_branch: master | |
| destination_folder: '.' | |
| user_email: '[email protected]' | |
| user_name: 'CharlesEGrant' | |
| commit_message: 'Update version file for the web site' | |