Updated the readme and manual

acpennlab · Feb 20, 2024 · 75f514c · 75f514c
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diff --git a/README.html b/README.html
@@ -32,10 +32,11 @@ <h3 id="using-the-statistics-resampling-package-online">Using the
 <a
 href="https://mybinder.org/v2/gh/acpennlab/statistics-resampling-online/master?labpath=statistics-resampling.ipynb"><img
 src="https://mybinder.org/badge_logo.svg" alt="Binder" /></a>: a
-ready-to-go implementation of statistics-resampling a Jupyter Notebook
-with an Octave kernel. <em>Note that the first time you use
-statistics-resampling online in Octave with Binder you can expect it to
-take a few minutes to build a docker image.</em></p>
+ready-to-go implementation of statistics-resampling in a JupyterLab
+Notebook with an Octave kernel. <em>Note that the first time (since the
+last repository commit) that you use statistics-resampling online with
+Binder you can expect it to take a few minutes to build a docker
+image.</em></p>
 <p>Collaborative student projects in GNU Octave can use the
 statistics-resampling package at <a
 href="https://octave-online.net/">Octave-Online</a>. Doing so requires
@@ -219,9 +220,14 @@ <h3 id="quick-start">Quick start</h3>
 sample size calculations for a two-sample test with nested
 design</a></p></li>
 </ul>
-<p>For an example of how to import (larger) data sets from a
-human-readable text file, like a comma-separated-value (CSV) file, see
-the last demonstration listed on <a
+<p>For examples of how to import data sets from a human-readable text
+file, like a tab-separated-value (TSV) and comma-separated-value (CSV)
+file, see the examples in the JupyterLab Notebook at <a
+href="https://mybinder.org/v2/gh/acpennlab/statistics-resampling-online/master?labpath=statistics-resampling.ipynb">statistics-resampling-online</a>
+<a
+href="https://mybinder.org/v2/gh/acpennlab/statistics-resampling-online/master?labpath=statistics-resampling.ipynb"><img
+src="https://mybinder.org/badge_logo.svg" alt="Binder" /></a> and the
+last demonstration listed on <a
 href="https://gnu-octave.github.io/statistics-resampling/function/randtest2.html#5">this
 page</a></p>
 <h3 id="issues">Issues</h3>

diff --git a/docs/copying.html b/docs/copying.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-02-18"/>
+  <meta name="date" content="2024-02-20"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />

diff --git a/docs/description.json b/docs/description.json
@@ -1,7 +1,7 @@
 {
   "generator": "generate_html",
   "generator_version": "0.3.3",
-  "date_generated": "2024-02-18",
+  "date_generated": "2024-02-20",
   "package": 
   {
     "name": "statistics-resampling",

diff --git a/docs/function/boot.html b/docs/function/boot.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-02-18"/>
+  <meta name="date" content="2024-02-20"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />

diff --git a/docs/function/boot1way.html b/docs/function/boot1way.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-02-18"/>
+  <meta name="date" content="2024-02-20"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -529,7 +529,7 @@ <h3><a name="7">Demonstration 7</a></h3>
 -----------------------------------------------------------------------------
 | Comparison |     Test # |      Ref # | Difference |          t |        p |
 |------------|------------|------------|------------|------------|----------|
-|          1 |          2 |          1 |    +0.9092 |      +1.70 |     .126 |
+|          1 |          2 |          1 |    +0.1148 |      +0.19 |     .844 |
 
 -----------------------------------------------------------------------------
 |    GROUP # |                                       GROUP label |        N |
@@ -574,7 +574,7 @@ <h3><a name="8">Demonstration 8</a></h3>
 -----------------------------------------------------------------------------
 | Comparison |     Test # |      Ref # | Difference |          t |        p |
 |------------|------------|------------|------------|------------|----------|
-|          1 |          2 |          1 |   +0.03248 |      +0.04 |     .943 |
+|          1 |          2 |          1 |    -0.5577 |      -0.57 |     .465 |
 
 -----------------------------------------------------------------------------
 |    GROUP # |                                       GROUP label |        N |

diff --git a/docs/function/bootbayes.html b/docs/function/bootbayes.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-02-18"/>
+  <meta name="date" content="2024-02-20"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -191,7 +191,7 @@ <h3><a name="1">Demonstration 1</a></h3>
 
 Posterior Statistics: 
  original     bias         median       stdev       CI_lower      CI_upper
- +184.5       +0.02861     +184.5       1.293       +182.1        +187.2</pre>
+ +184.5       -0.02210     +184.5       1.240       +182.1        +186.9</pre>
 </div>
 
 <h3><a name="2">Demonstration 2</a></h3>
@@ -228,8 +228,8 @@ <h3><a name="2">Demonstration 2</a></h3>
 
 Posterior Statistics: 
  original     bias         median       stdev       CI_lower      CI_upper
- +175.5       -0.08181     +175.4       2.404       +170.7        +180.1    
- +0.1904      +0.001776    +0.1926      0.07978     +0.03726      +0.3460</pre>
+ +175.5       +0.03532     +175.5       2.384       +171.1        +180.3    
+ +0.1904      -0.001074    +0.1909      0.07912     +0.04160      +0.3442</pre>
 </div>
 
 <p>Package: <a href="../index.html">statistics-resampling</a></p>

diff --git a/docs/function/bootcdf.html b/docs/function/bootcdf.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-02-18"/>
+  <meta name="date" content="2024-02-20"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />

diff --git a/docs/function/bootci.html b/docs/function/bootci.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-02-18"/>
+  <meta name="date" content="2024-02-20"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />

diff --git a/docs/function/bootclust.html b/docs/function/bootclust.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-02-18"/>
+  <meta name="date" content="2024-02-20"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -174,7 +174,7 @@ <h3><a name="1">Demonstration 1</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +29.65       -4.619e-14   +2.614       +23.45       +34.51</pre>
+ +29.65       -4.263e-14   +2.546       +23.58       +34.50</pre>
 </div>
 
 <h3><a name="2">Demonstration 2</a></h3>
@@ -204,7 +204,7 @@ <h3><a name="2">Demonstration 2</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +29.65       -0.03435     +2.909       +22.40       +35.62</pre>
+ +29.65       -0.04092     +2.935       +22.61       +35.83</pre>
 </div>
 
 <h3><a name="3">Demonstration 3</a></h3>
@@ -232,7 +232,7 @@ <h3><a name="3">Demonstration 3</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -6.674       +41.84       +97.53       +235.5</pre>
+ +171.5       -6.491       +40.86       +99.28       +234.9</pre>
 </div>
 
 <h3><a name="4">Demonstration 4</a></h3>
@@ -262,7 +262,7 @@ <h3><a name="4">Demonstration 4</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -9.522       +33.81       +103.5       +215.0</pre>
+ +171.5       -9.145       +32.96       +105.8       +215.0</pre>
 </div>
 
 <h3><a name="5">Demonstration 5</a></h3>
@@ -285,11 +285,11 @@ <h3><a name="5">Demonstration 5</a></h3>
  Resampling method: Balanced, bootstrap cluster resampling 
  Number of resamples: 1999 
  Confidence interval (CI) type: Bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 90% (12.3%, 98.7%)
+ Nominal coverage (and the percentiles used): 90% (12.7%, 98.8%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -6.312       +41.84       +116.9       +263.9</pre>
+ +171.5       -6.336       +40.80       +118.7       +262.9</pre>
 </div>
 
 <h3><a name="6">Demonstration 6</a></h3>
@@ -314,11 +314,11 @@ <h3><a name="6">Demonstration 6</a></h3>
  Resampling method: Balanced, bootstrap cluster resampling 
  Number of resamples: 1999 
  Confidence interval (CI) type: Bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 90% (14.2%, 98.9%)
+ Nominal coverage (and the percentiles used): 90% (12.9%, 98.7%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -9.624       +33.37       +125.3       +231.5</pre>
+ +171.5       -9.570       +32.89       +123.5       +229.9</pre>
 </div>
 
 <h3><a name="7">Demonstration 7</a></h3>
@@ -344,8 +344,8 @@ <h3><a name="7">Demonstration 7</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- -0.1236      +3.489e-05   +0.2123      -0.4434      +0.2593    
- -0.2114      +0.01794     +0.1991      -0.4872      +0.1585</pre>
+ +0.3965      +0.02430     +0.2575      -0.04019     +0.7941    
+ +0.005570    -0.04574     +0.2760      -0.4817      +0.3911</pre>
 </div>
 
 <h3><a name="8">Demonstration 8</a></h3>
@@ -372,8 +372,8 @@ <h3><a name="8">Demonstration 8</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +0.05012     +0.01905     +0.08608     -0.08117     +0.1758    
- +0.09245     -0.02544     +0.2722      -0.3105      +0.5975</pre>
+ -0.2356      -0.03324     +0.1505      -0.4467      +0.02341   
+ -0.06405     +0.002349    +0.1618      -0.3414      +0.1897</pre>
 </div>
 
 <h3><a name="9">Demonstration 9</a></h3>
@@ -400,11 +400,11 @@ <h3><a name="9">Demonstration 9</a></h3>
  Resampling method: Balanced, bootstrap cluster resampling 
  Number of resamples: 1999 
  Confidence interval (CI) type: Bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 95% (1.6%, 96.4%)
+ Nominal coverage (and the percentiles used): 95% (2.0%, 97.0%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +0.7764      -0.02525     +0.1489      +0.3673      +0.9946</pre>
+ +0.7764      -0.02542     +0.1443      +0.4041      +0.9975</pre>
 </div>
 
 <p>Package: <a href="../index.html">statistics-resampling</a></p>

diff --git a/docs/function/bootknife.html b/docs/function/bootknife.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-02-18"/>
+  <meta name="date" content="2024-02-20"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -223,11 +223,11 @@ <h3><a name="1">Demonstration 1</a></h3>
  Number of resamples (outer): 1999 
  Number of resamples (inner): 0 
  Confidence interval (CI) type: Expanded bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 95% (1.3%, 97.2%)
+ Nominal coverage (and the percentiles used): 95% (1.2%, 96.9%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +29.65       +6.040e-14   +2.574       +23.82       +34.39</pre>
+ +29.65       -1.421e-14   +2.625       +23.38       +34.36</pre>
 </div>
 
 <h3><a name="2">Demonstration 2</a></h3>
@@ -253,11 +253,11 @@ <h3><a name="2">Demonstration 2</a></h3>
  Number of resamples (outer): 1999 
  Number of resamples (inner): 199 
  Confidence interval (CI) type: Calibrated percentile
- Nominal coverage (and the percentiles used): 95% (1.2%, 97.2%)
+ Nominal coverage (and the percentiles used): 95% (0.9%, 97.5%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +29.65       +8.527e-14   +2.732       +23.66       +34.62</pre>
+ +29.65       -7.105e-15   +2.824       +23.09       +34.88</pre>
 </div>
 
 <h3><a name="3">Demonstration 3</a></h3>
@@ -284,11 +284,11 @@ <h3><a name="3">Demonstration 3</a></h3>
  Number of resamples (outer): 1999 
  Number of resamples (inner): 199 
  Confidence interval (CI) type: Calibrated percentile
- Nominal coverage (and the percentiles used): 95% (2.1%, 97.7%)
+ Nominal coverage (and the percentiles used): 95% (2.1%, 98.2%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +30.86       -0.02952     +2.993       +24.64       +36.89</pre>
+ +30.86       -0.02395     +2.949       +24.80       +37.16</pre>
 </div>
 
 <h3><a name="4">Demonstration 4</a></h3>
@@ -317,7 +317,7 @@ <h3><a name="4">Demonstration 4</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -6.779       +43.14       +96.63       +237.1</pre>
+ +171.5       -6.948       +42.58       +96.24       +235.4</pre>
 </div>
 
 <h3><a name="5">Demonstration 5</a></h3>
@@ -341,11 +341,11 @@ <h3><a name="5">Demonstration 5</a></h3>
  Number of resamples (outer): 1999 
  Number of resamples (inner): 0 
  Confidence interval (CI) type: Bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 90% (12.3%, 98.7%)
+ Nominal coverage (and the percentiles used): 90% (12.8%, 98.8%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -6.756       +42.38       +115.0       +265.1</pre>
+ +171.5       -7.202       +42.45       +115.4       +263.1</pre>
 </div>
 
 <h3><a name="6">Demonstration 6</a></h3>
@@ -372,11 +372,11 @@ <h3><a name="6">Demonstration 6</a></h3>
  Number of resamples (outer): 1999 
  Number of resamples (inner): 199 
  Confidence interval (CI) type: Calibrated percentile (equal-tailed)
- Nominal coverage (and the percentiles used): 90% (2.8%, 97.2%)
+ Nominal coverage (and the percentiles used): 90% (2.2%, 97.8%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -6.719       +44.49       +86.95       +252.5</pre>
+ +171.5       -6.716       +43.13       +87.19       +256.2</pre>
 </div>
 
 <h3><a name="7">Demonstration 7</a></h3>
@@ -402,11 +402,11 @@ <h3><a name="7">Demonstration 7</a></h3>
  Number of resamples (outer): 1999 
  Number of resamples (inner): 199 
  Confidence interval (CI) type: Calibrated percentile
- Nominal coverage (and the percentiles used): 90% (12.0%, 99.5%)
+ Nominal coverage (and the percentiles used): 90% (10.5%, 99.5%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -7.692       +45.06       +113.8       +275.9</pre>
+ +171.5       -7.392       +44.50       +112.0       +282.0</pre>
 </div>
 
 <h3><a name="8">Demonstration 8</a></h3>
@@ -433,8 +433,8 @@ <h3><a name="8">Demonstration 8</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- -0.2385      +0.0008506   +0.2941      -0.6348      +0.3469    
- -0.1505      -0.005069    +0.3300      -0.6846      +0.4004</pre>
+ +0.03762     +0.008705    +0.1750      -0.2850      +0.2904    
+ +0.1001      -0.03228     +0.2525      -0.3477      +0.4544</pre>
 </div>
 
 <h3><a name="9">Demonstration 9</a></h3>
@@ -461,11 +461,11 @@ <h3><a name="9">Demonstration 9</a></h3>
  Number of resamples (outer): 1999 
  Number of resamples (inner): 0 
  Confidence interval (CI) type: Bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 95% (0.5%, 93.6%)
+ Nominal coverage (and the percentiles used): 95% (0.4%, 92.8%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +0.7764      -0.005495    +0.1353      +0.3591      +0.9463</pre>
+ +0.7764      -0.005893    +0.1403      +0.2548      +0.9438</pre>
 </div>
 
 <h3><a name="10">Demonstration 10</a></h3>
@@ -577,13 +577,13 @@ <h3><a name="10">Demonstration 10</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- -16.69       -0.5096      +2.046       -20.36       -12.56     
- -11.72       -0.3575      +1.785       -14.99       -8.157     
- -8.061       -0.2587      +1.680       -11.15       -4.605     
- +0.1048      +0.005536    +0.08937     -0.07576     +0.2695    
- +0.01034     +0.0007082   +0.006622    -0.003099    +0.02326   
- +0.06452     +0.002339    +0.01603     +0.03253     +0.09484   
- +0.001664    +3.010e-06   +0.0007336   +0.0002312   +0.003136</pre>
+ -16.69       -0.5257      +2.102       -20.20       -12.24     
+ -11.72       -0.3640      +1.843       -14.95       -7.903     
+ -8.061       -0.2629      +1.749       -11.15       -4.376     
+ +0.1048      +0.005331    +0.09083     -0.07590     +0.2793    
+ +0.01034     +0.0007389   +0.006778    -0.002881    +0.02330   
+ +0.06452     +0.002321    +0.01701     +0.03197     +0.09676   
+ +0.001664    +6.490e-06   +0.0007586   +0.0002368   +0.003140</pre>
 </div>
 
 <h3><a name="11">Demonstration 11</a></h3>