Bayesian biclustering

Supplementary material for the paper 'Some Bayesian biclustering Methods: Modeling and inference'

Description of the files

• BayesianBiclustering_NonMissing_v1.R - first version of the MCMC sampler for non-missing data
• BayesianBiclustering_NonMissing_v2.R - second version of the MCMC sampler for non-missing data
• BayesianBiclustering_WithMissing.R - MCMC sampler for datasets with missing entries
• cppFunc.cpp - C++ implementation to compute average Rand index (for rows, columns, and elements)
• SimStudies.R - additional code for simulation studies 6.1.3, 6.2, and 6.3
• SimStudies_X.rds - dataset for simulation studies 6.1.3, 6.2, and 6.3
• MultBiclust.R - additional code for simulation study 6.4
• MultBiclust_X.rds - dataset for simulation study 6.4
• OverlapMultBiclust.R - additional code for simulation study 6.5
• OverlapMultBiclust_X.rds - dataset for simulation study 6.5
• LungCancer.rds - lung cancer gene expression dataset
• trueColumnCluster.rds - "true" column clustering for lung cancer gene expression dataset
• AgYield.rds - agricultural yield dataset
• idr0.rds - initial row clustering used for agricultural dataset analysis
• idc0.rds - initial column clustering used for agricultural dataset analysis
• AgYield_MAR.R - MAR version of Bayesian biclustering with agricultural yield dataset
• Supplementary_Document_for_Paper_on_Bayesian_Biclustering.pdf - tables and plots supporting the paper