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Update params.yaml
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adapted rt field description (same for MGF and CSV files)
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dolivierj authored Jan 30, 2023
1 parent 6933ba2 commit c23572e
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions examples/working_directory/params/params.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ pos_mgf: '200912_LDB_Thermo_POS.mgf' # Input MGF output for POS data
pos_csv: '200912_LDB_Thermo_POS.csv' # Input CSV output for POS data
neg_mgf: '200909_LDB_Thermo_NEG.mgf' # Input MGF output for NEG data
neg_csv: '200909_LDB_Thermo_NEG.csv' # Input CSV output for NEG data
rt_field: 'rtinseconds' # rt field to be used from the spectrum file
rt_field: 'rtinseconds' # rt field to be used from the spectrum and csv files
mz_field: 'pepmass' # mz field to be used from the spectrum file
charge_field: 'charge' # charge field in the spectrum file
rt_unit: 's' # 's' or 'm', seconds or minutes.
Expand Down Expand Up @@ -93,4 +93,4 @@ c_export_samples: True # True/False, whether or not to export results for each s
# MolNet parameters
mn_mass_error: 0.002 # Mass error in Da
mn_cosine_threshold: 0.98 # Cosine threshold, must be higher than usual here
mn_matched_peaks: 8 # Minimum shared peaks, must be higher than usual here
mn_matched_peaks: 8 # Minimum shared peaks, must be higher than usual here

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