feat: auto_bbox, dst_tighten_bounds, VolumetricApplyFlow+numpy

specs/dodam/meshing_generate_meshes.cue

@@ -0,0 +1,64 @@
+//
+// Handy variables
+#SEG_PATH: "gs://dodam_exp/seg_medcutout"
+// Read the `mesh`dir` requirement in mesh_generation.py
+#MESH_DIR: "mesh_mip_1_err_40"
+#BBOX: {
+	"@type": "BBox3D.from_coords"
+	start_coord: [1024 * 5, 1024 * 5, 1995]
+	end_coord: [1024 * 6, 1024 * 6, 1995 + 128]
+	resolution: [20, 20, 50]
+}
+
+#SEG_DB_PATH:  "dodam-med-seg-512-512-128v3"
+#FRAG_DB_PATH:  "dodam-med-frag-512-512-128v3"
+#PROJECT:                "zetta-research"
+
+
+// Execution parameters
+"@type":                "mazepa.execute_on_gcp_with_sqs"
+worker_image:           "us-east1-docker.pkg.dev/zetta-research/zutils/zetta_utils:dodam-meshing-15"
+worker_cluster_name:    "zutils-x3"
+worker_cluster_region:  "us-east1"
+worker_cluster_project: "zetta-research"
+worker_resources: {
+	memory: "18560Mi"
+	//"nvidia.com/gpu": "1"
+}
+worker_replicas: 100
+num_procs: 1
+semaphores_spec: {
+	"read": 1
+	"write": 1
+	"cuda": 0
+	"cpu": 1
+}
+
+local_test:      true // set to `false` execute remotely
+do_dryrun_estimation: false
+
+target: {
+	"@type": "build_generate_meshes_flow"
+	bbox:    #BBOX
+	seg_resolution: [20, 20, 50]
+	frag_chunk_size: [512, 512, 64]
+    segmentation: {
+        "@type": "build_cv_layer"
+        path:    #SEG_PATH
+    }
+    seg_db: {
+        "@type":   "build_datastore_layer"
+        namespace: #SEG_DB_PATH
+        project:   #PROJECT
+    }
+    frag_db: {
+        "@type":   "build_datastore_layer"
+        namespace: #FRAG_DB_PATH
+        project:   #PROJECT
+    }
+    mesh_dir: #MESH_DIR
+    frag_num_splits: [2,2,1]
+	num_lods: 5
+	min_shards: 1
+	num_shard_no_tasks: 16
+}