ZFIN-9435: UniProt Load Report Improvements #1291
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Improve structure of code for generating uniprotDatFile information in the report output. Add RefSeqs to DELETE's portion of report.
Fix RefSeq parsing
Move the uniprotDatFile information from each individual action to its own map. Then the entries from the map can be referenced by the 'uniprotAccessions' field on each action.
Extract method to make the logic easier to follow and more explicit in what it does.
Extract method to make the logic easier to follow and more explicit in what it does.
Use state of zfin db for determining if a uniprot record is linked to any genes or not
Allow removing more than one accession per gene. Add more info to the summary of the report.
…clude information about obsoleted RefSeqs (if we find that information).
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Test harness class:
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…mmand directly to fix proxy problem.
(cherry picked from commit 8dfa7b7)
Make IDs copyable for antibody, company, lab, person views. Don't show an empty orcid link if there's no orcid.
…ignore those DELETEs
cmpich
approved these changes
Jan 22, 2025
Bundle of all changes from the tomcat10 branch
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Improve the reports for uniprot load including smaller output files.
Cross check deleted uniprot accessions against NCBI to see if there is an obsolete RefSeq involved in the mapping.