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contribution-knowledge-mining/index.html

@@ -172,7 +172,7 @@ <h2 id="1-frist-time-implementation-of-comparative-biological-theme-analysis">
 <p><a href="http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118"><img src="/images/knowledge-mining/cp-cover.png" width='1000px'/></a></p>
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-<p>As experimental designs evolved beyond simple case-control setups, encompassing complex configurations involving multiple time points and conditions became imperative for studying biomedical phenomena. Recognizing this need, We devloped the <a href="https://www.bioconductor.org/packages/clusterProfiler"  class="external-link" target="_blank" rel="noopener">clusterProfiler</a> for comparing biological themes, a pivotal contribution published in <a href="http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118"  class="external-link" target="_blank" rel="noopener"><em>OMICS: A Journal of Integrative Biology</em></a> in 2012. This work has garnered over 20,000 citations, making it the most highly cited paper in the journal and one of China&rsquo;s top 10 highly cited papers from 2011 to 2021. With its exceptionally user-friendly interface, <a href="https://www.bioconductor.org/packages/clusterProfiler"  class="external-link" target="_blank" rel="noopener">clusterProfiler</a> enables users to specify complex experimental designs using <a href="https://stat.ethz.ch/R-manual/R-devel/library/stats/html/formula.html"  class="external-link" target="_blank" rel="noopener">formula syntax</a>. This capability as exemplified in an article published in <a href="https://doi.org/10.1016/j.xinn.2021.100141"  class="external-link" target="_blank" rel="noopener"><em>The Innovation</em></a> in 2021, where data showcasing different time points with various drug treatments simultaneously were presented. Twelve years after its initial publication, we authored a protocol-type article introducing the functionality of comparing biological themes in disease subtypes, functions of perturbed transcription factors, and cell type annotations using various omics data sets, including metagenomics, metabolomics, transcriptomics, and single-cell omics. This work was published in <a href="" ><em>Nature Protocols</em></a> in 2024.</p>
+<p>As experimental designs evolved beyond simple case-control setups, encompassing complex configurations involving multiple time points and conditions became imperative for studying biomedical phenomena. Recognizing this need, We devloped the <a href="https://www.bioconductor.org/packages/clusterProfiler"  class="external-link" target="_blank" rel="noopener">clusterProfiler</a> for comparing biological themes, a pivotal contribution published in <a href="http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118"  class="external-link" target="_blank" rel="noopener"><em>OMICS: A Journal of Integrative Biology</em></a> in 2012. This work has garnered over 20,000 citations, making it the most highly cited paper in the journal and one of China&rsquo;s top 10 highly cited papers from 2011 to 2021. With its exceptionally user-friendly interface, <a href="https://www.bioconductor.org/packages/clusterProfiler"  class="external-link" target="_blank" rel="noopener">clusterProfiler</a> enables users to specify complex experimental designs using <a href="https://stat.ethz.ch/R-manual/R-devel/library/stats/html/formula.html"  class="external-link" target="_blank" rel="noopener">formula syntax</a>. This capability as exemplified in an article published in <a href="https://doi.org/10.1016/j.xinn.2021.100141"  class="external-link" target="_blank" rel="noopener"><em>The Innovation</em></a> in 2021, where data showcasing different time points with various drug treatments simultaneously were presented. Twelve years after its initial publication, we authored a protocol-type article introducing the functionality of comparing biological themes in disease subtypes, functions of perturbed transcription factors, and cell type annotations using various omics data sets, including metagenomics, metabolomics, transcriptomics, and single-cell omics. This work was published in <a href="https://www.nature.com/articles/s41596-024-01020-z"  class="external-link" target="_blank" rel="noopener"><em>Nature Protocols</em></a> in 2024 and was selected as a <a href="/images/knowledge-mining/featured-protocol-2024.jpeg" >feature protocol</a> of the journal.</p>
 </td>
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index.xml

@@ -111,7 +111,7 @@
       <link>http://yulab-smu.top/news/</link>
       <pubDate>Mon, 01 Jan 0001 00:00:00 +0000</pubDate>
       <guid>http://yulab-smu.top/news/</guid>
-      <description>Jul 2024: fanyi包在Chinese Medical Journal发表，恭喜王荻霏（临床医学本科生）。&#xA;Jul 2024: clusterProfiler在Nature Protocols发表，恭喜徐双斌、谢子敬和罗晓。&#xA;受邀在Springer Nature Research Communities的“Behind the Paper”栏目分享该论文的研究经历 南方医科大学基础医学院报道文章 Jul 2024: 余光创受邀请在香港大学Croucher Summer Course: Virus evolution and epidemiology讲授ggtree。&#xA;Jul 2024: 2024年前沿创新大会，颁发多个奖项，余光创获得Best Reviewer奖项，团队文章荣获Best Paper, Most Read, Most Download三个奖项。&#xA;Jun 2024: 余光创获得2024年广东省研究生教育创新计划项目资助（项目批准号：2024SFKC_019）；立项类型：研究生示范课程；项目名称：生物信息学。&#xA;May 2024: 我校入选教育部“101计划”生物信息学虚拟教研室，王倩雯作为代表接受授牌。&#xA;May 2024: CCF（中国计算机学会）开源创新大赛暨第二届Bio-OS开源开放大赛在我校启动，余光创主持开幕式，会议同时成立了【南方医科大学Bio-OS开源俱乐部】。&#xA;May 2024: 恭喜谢汶琴、李林顺利通过毕业答辩。&#xA;May 2024: 📝 Decoding the Brain: Unveiling Comprehensive Cellular Atlases through Multiomics Mega Data 发表在The Innovation期刊，恭喜王倩雯。&#xA;Apr 2024: 雷峰网访谈：专访南医大生信系主任余光创：没有哪个专业绝对优越，生信人做好「工具人」也不简单&#xA;Apr 2024: 陶绍国（客座学生，广州医科大学）加入课题组。&#xA;Apr 2024: 📝 Encoding biological metaverse: Advancements and challenges in neural fields from macroscopic to microscopic 发表在The Innovation期刊。</description>
+      <description>Jul 2024: fanyi包在Chinese Medical Journal发表，恭喜王荻霏（临床医学本科生）。&#xA;Jul 2024: clusterProfiler在Nature Protocols发表，恭喜徐双斌、谢子敬和罗晓。&#xA;入选为Nature Protocols期刊的Feature Protocol 受邀在Springer Nature Research Communities的“Behind the Paper”栏目分享该论文的研究经历 南方医科大学基础医学院报道文章 Jul 2024: 余光创受邀请在香港大学Croucher Summer Course: Virus evolution and epidemiology讲授ggtree。&#xA;Jul 2024: 2024年前沿创新大会，颁发多个奖项，余光创获得Best Reviewer奖项，团队文章荣获Best Paper, Most Read, Most Download三个奖项。&#xA;Jun 2024: 余光创获得2024年广东省研究生教育创新计划项目资助（项目批准号：2024SFKC_019）；立项类型：研究生示范课程；项目名称：生物信息学。&#xA;May 2024: 我校入选教育部“101计划”生物信息学虚拟教研室，王倩雯作为代表接受授牌。&#xA;May 2024: CCF（中国计算机学会）开源创新大赛暨第二届Bio-OS开源开放大赛在我校启动，余光创主持开幕式，会议同时成立了【南方医科大学Bio-OS开源俱乐部】。&#xA;May 2024: 恭喜谢汶琴、李林顺利通过毕业答辩。&#xA;May 2024: 📝 Decoding the Brain: Unveiling Comprehensive Cellular Atlases through Multiomics Mega Data 发表在The Innovation期刊，恭喜王倩雯。&#xA;Apr 2024: 雷峰网访谈：专访南医大生信系主任余光创：没有哪个专业绝对优越，生信人做好「工具人」也不简单&#xA;Apr 2024: 陶绍国（客座学生，广州医科大学）加入课题组。</description>
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       <title>Projects</title>

news/index.html

@@ -15,49 +15,46 @@
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 <meta name="description" content="Jul 2024: fanyi包在Chinese Medical Journal发表，恭喜王荻霏（临床医学本科生）。
 Jul 2024: clusterProfiler在Nature Protocols发表，恭喜徐双斌、谢子敬和罗晓。
-受邀在Springer Nature Research Communities的“Behind the Paper”栏目分享该论文的研究经历 南方医科大学基础医学院报道文章 Jul 2024: 余光创受邀请在香港大学Croucher Summer Course: Virus evolution and epidemiology讲授ggtree。
+入选为Nature Protocols期刊的Feature Protocol 受邀在Springer Nature Research Communities的“Behind the Paper”栏目分享该论文的研究经历 南方医科大学基础医学院报道文章 Jul 2024: 余光创受邀请在香港大学Croucher Summer Course: Virus evolution and epidemiology讲授ggtree。
 Jul 2024: 2024年前沿创新大会，颁发多个奖项，余光创获得Best Reviewer奖项，团队文章荣获Best Paper, Most Read, Most Download三个奖项。
 Jun 2024: 余光创获得2024年广东省研究生教育创新计划项目资助（项目批准号：2024SFKC_019）；立项类型：研究生示范课程；项目名称：生物信息学。
 May 2024: 我校入选教育部“101计划”生物信息学虚拟教研室，王倩雯作为代表接受授牌。
 May 2024: CCF（中国计算机学会）开源创新大赛暨第二届Bio-OS开源开放大赛在我校启动，余光创主持开幕式，会议同时成立了【南方医科大学Bio-OS开源俱乐部】。
 May 2024: 恭喜谢汶琴、李林顺利通过毕业答辩。
 May 2024: 📝 Decoding the Brain: Unveiling Comprehensive Cellular Atlases through Multiomics Mega Data 发表在The Innovation期刊，恭喜王倩雯。
 Apr 2024: 雷峰网访谈：专访南医大生信系主任余光创：没有哪个专业绝对优越，生信人做好「工具人」也不简单
-Apr 2024: 陶绍国（客座学生，广州医科大学）加入课题组。
-Apr 2024: 📝 Encoding biological metaverse: Advancements and challenges in neural fields from macroscopic to microscopic 发表在The Innovation期刊。">
+Apr 2024: 陶绍国（客座学生，广州医科大学）加入课题组。">
 <meta name="keywords" content="developer,bioinformatics,omics,visualization">
 
 
   <meta name="twitter:card" content="summary">
   <meta name="twitter:title" content="News">
   <meta name="twitter:description" content="Jul 2024: fanyi包在Chinese Medical Journal发表，恭喜王荻霏（临床医学本科生）。
 Jul 2024: clusterProfiler在Nature Protocols发表，恭喜徐双斌、谢子敬和罗晓。
-受邀在Springer Nature Research Communities的“Behind the Paper”栏目分享该论文的研究经历 南方医科大学基础医学院报道文章 Jul 2024: 余光创受邀请在香港大学Croucher Summer Course: Virus evolution and epidemiology讲授ggtree。
+入选为Nature Protocols期刊的Feature Protocol 受邀在Springer Nature Research Communities的“Behind the Paper”栏目分享该论文的研究经历 南方医科大学基础医学院报道文章 Jul 2024: 余光创受邀请在香港大学Croucher Summer Course: Virus evolution and epidemiology讲授ggtree。
 Jul 2024: 2024年前沿创新大会，颁发多个奖项，余光创获得Best Reviewer奖项，团队文章荣获Best Paper, Most Read, Most Download三个奖项。
 Jun 2024: 余光创获得2024年广东省研究生教育创新计划项目资助（项目批准号：2024SFKC_019）；立项类型：研究生示范课程；项目名称：生物信息学。
 May 2024: 我校入选教育部“101计划”生物信息学虚拟教研室，王倩雯作为代表接受授牌。
 May 2024: CCF（中国计算机学会）开源创新大赛暨第二届Bio-OS开源开放大赛在我校启动，余光创主持开幕式，会议同时成立了【南方医科大学Bio-OS开源俱乐部】。
 May 2024: 恭喜谢汶琴、李林顺利通过毕业答辩。
 May 2024: 📝 Decoding the Brain: Unveiling Comprehensive Cellular Atlases through Multiomics Mega Data 发表在The Innovation期刊，恭喜王倩雯。
 Apr 2024: 雷峰网访谈：专访南医大生信系主任余光创：没有哪个专业绝对优越，生信人做好「工具人」也不简单
-Apr 2024: 陶绍国（客座学生，广州医科大学）加入课题组。
-Apr 2024: 📝 Encoding biological metaverse: Advancements and challenges in neural fields from macroscopic to microscopic 发表在The Innovation期刊。">
+Apr 2024: 陶绍国（客座学生，广州医科大学）加入课题组。">
 
 <meta property="og:url" content="http://yulab-smu.top/news/">
   <meta property="og:site_name" content="YuLab@SMU">
   <meta property="og:title" content="News">
   <meta property="og:description" content="Jul 2024: fanyi包在Chinese Medical Journal发表，恭喜王荻霏（临床医学本科生）。
 Jul 2024: clusterProfiler在Nature Protocols发表，恭喜徐双斌、谢子敬和罗晓。
-受邀在Springer Nature Research Communities的“Behind the Paper”栏目分享该论文的研究经历 南方医科大学基础医学院报道文章 Jul 2024: 余光创受邀请在香港大学Croucher Summer Course: Virus evolution and epidemiology讲授ggtree。
+入选为Nature Protocols期刊的Feature Protocol 受邀在Springer Nature Research Communities的“Behind the Paper”栏目分享该论文的研究经历 南方医科大学基础医学院报道文章 Jul 2024: 余光创受邀请在香港大学Croucher Summer Course: Virus evolution and epidemiology讲授ggtree。
 Jul 2024: 2024年前沿创新大会，颁发多个奖项，余光创获得Best Reviewer奖项，团队文章荣获Best Paper, Most Read, Most Download三个奖项。
 Jun 2024: 余光创获得2024年广东省研究生教育创新计划项目资助（项目批准号：2024SFKC_019）；立项类型：研究生示范课程；项目名称：生物信息学。
 May 2024: 我校入选教育部“101计划”生物信息学虚拟教研室，王倩雯作为代表接受授牌。
 May 2024: CCF（中国计算机学会）开源创新大赛暨第二届Bio-OS开源开放大赛在我校启动，余光创主持开幕式，会议同时成立了【南方医科大学Bio-OS开源俱乐部】。
 May 2024: 恭喜谢汶琴、李林顺利通过毕业答辩。
 May 2024: 📝 Decoding the Brain: Unveiling Comprehensive Cellular Atlases through Multiomics Mega Data 发表在The Innovation期刊，恭喜王倩雯。
 Apr 2024: 雷峰网访谈：专访南医大生信系主任余光创：没有哪个专业绝对优越，生信人做好「工具人」也不简单
-Apr 2024: 陶绍国（客座学生，广州医科大学）加入课题组。
-Apr 2024: 📝 Encoding biological metaverse: Advancements and challenges in neural fields from macroscopic to microscopic 发表在The Innovation期刊。">
+Apr 2024: 陶绍国（客座学生，广州医科大学）加入课题组。">
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@@ -183,6 +180,7 @@ <h1 class="title">
     <p><strong><font color="green">Jul 2024</font></strong>: fanyi包在<a href="https://journals.lww.com/cmj/fulltext/9900/reducing_language_barriers,_promoting_information.1158.aspx"  class="external-link" target="_blank" rel="noopener"><em><strong>Chinese Medical Journal</strong></em></a>发表，恭喜王荻霏（临床医学本科生）。</p>
 <p><strong><font color="green">Jul 2024</font></strong>: clusterProfiler在<a href="https://www.nature.com/articles/s41596-024-01020-z"  class="external-link" target="_blank" rel="noopener"><em><strong>Nature Protocols</strong></em></a>发表，恭喜徐双斌、谢子敬和罗晓。</p>
 <ul>
+<li>入选为Nature Protocols期刊的<a href="/images/knowledge-mining/featured-protocol-2024.jpeg" >Feature Protocol</a></li>
 <li>受邀在Springer Nature Research Communities的“Behind the Paper”栏目分享<a href="https://communities.springernature.com/posts/using-clusterprofiler-to-characterise-multi-omics-data"  class="external-link" target="_blank" rel="noopener">该论文的研究经历</a></li>
 <li>南方医科大学基础医学院<a href="https://portal.smu.edu.cn/jcyxy/info/1046/6504.htm"  class="external-link" target="_blank" rel="noopener">报道文章</a></li>
 </ul>