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scm_auto.xml
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<?xml version="1.0"?>
<!DOCTYPE workflow
[
<!--Scrub Times-->
<!ENTITY CYCLE_THROTTLE "4">
<!--Experiment parameters such as starting, ending dates, CCPP suite-->
<!ENTITY SDATE "201608110000">
<!ENTITY EDATE "201608130000">
<!ENTITY INTERVAL "3:00:00">
<!ENTITY CCPP_SUITE "SCM_RAP">
<!ENTITY EXP "icon">
<!ENTITY GRID "2.5">
<!--Experiment related directories-->
<!ENTITY SCM_ROOT "/PATH/TO/ccpp-scm">
<!ENTITY ICON_IC "/PATH/TO/IC">
<!ENTITY COMBINE_IC "/PATH/TO/IC/combined_ic">
<!ENTITY SPLIT_IC "/PATH/TO/IC/proc">
<!ENTITY RUN_DIR "/PATH/TO/ccpp-scm/scm">
<!ENTITY SCM_RESULTS "/PATH/TO/scm_results/&CCPP_SUITE;">
<!ENTITY CONCATE_OUTPUT "/PATH/TO/scm_results/&CCPP_SUITE;">
<!ENTITY SCRIPTS "/PATH/TO/scm_auto/scripts">
<!ENTITY PYSCRIPTS "/PATH/TO/scm_auto/python_scripts">
<!ENTITY LOG "/PATH/TO/scm_auto/log_&EXP;_&CCPP_SUITE;">
<!ENTITY STDOUT "/PATH/TO/scm_auto/stdout_&EXP;_&CCPP_SUITE;">
<!--Machine related entities-->
<!ENTITY SCHEDULER "slurm">
<!--ROCOTO parameters that control workflow-->
<!ENTITY CYCLE_THROTTLE "12">
<!--BEGIN: Resource requirements for the workflow-->
<!ENTITY WALLTIME_COMBINE_IC "00:05:00">
<!ENTITY RESOURCES_COMBINE_IC "<nodes>1:ppn=1:tpp=1</nodes>">
<!ENTITY WALLTIME_SPLIT_IC "02:59:00">
<!ENTITY RESOURCES_SPLIT_IC "<nodes>1:ppn=2:tpp=20</nodes>">
<!ENTITY WALLTIME_RUN_SCM "07:59:00">
<!ENTITY RESOURCES_RUN_SCM "<nodes>4:ppn=2:tpp=10</nodes>">
<!ENTITY WALLTIME_LATLON_MOVE "07:59:00">
<!ENTITY RESOURCES_LATLON_MOVE "<nodes>2:ppn=2:tpp=20</nodes>">
<!ENTITY WALLTIME_CONCATE_INST "02:59:00">
<!ENTITY RESOURCES_CONCATE_INST "<nodes>1:ppn=2:tpp=10</nodes>">
<!ENTITY WALLTIME_CONCATE_ACCUM "07:59:00">
<!ENTITY RESOURCES_CONCATE_ACCUM "<nodes>1:ppn=2:tpp=20</nodes>">
<!ENTITY WALLTIME_TAR_SCM "02:29:00">
<!ENTITY RESOURCES_TAR_SCM "<nodes>1:ppn=2:tpp=8</nodes>">
<!ENTITY WALLTIME_RM_SCM "00:59:00">
<!ENTITY RESOURCES_RM_SCM "<nodes>1:ppn=2:tpp=20</nodes>">
<!ENTITY WALLTIME_CONCATE_TIME "07:59:00">
<!ENTITY RESOURCES_CONCATE_TIME "<nodes>1:ppn=2:tpp=20</nodes>">
]>
<!--workflow below here-->
<workflow realtime="F" cyclethrottle="&CYCLE_THROTTLE;" scheduler="&SCHEDULER;" taskthrottle="20">
<log><cyclestr>&LOG;/combine_@Y@m@d@H_&EXP;_&CCPP_SUITE;.log</cyclestr></log>
<cycledef group="icon">&SDATE; &EDATE; &INTERVAL;</cycledef>
<cycledef group="at_end">00 00 13 08 2016 *</cycledef>
<task name="combine_ic" cycledefs="icon" maxtries="3" final="false">
<command>&SCRIPTS;/combine_ic.sh</command>
<jobname><cyclestr>@m@d@H_combine</cyclestr></jobname>
<account>gmtb</account>
&RESOURCES_COMBINE_IC;
<walltime>&WALLTIME_COMBINE_IC;</walltime>
<join>&STDOUT;/combine_ic/<cyclestr>@m@d@H_combineic_&EXP;_&CCPP_SUITE;.out</cyclestr></join>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_3</name><value><cyclestr offset="3:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_6</name><value><cyclestr offset="6:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_9</name><value><cyclestr offset="9:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>ICON_IC</name><value>&ICON_IC;</value></envar>
<envar><name>COMBINE_IC</name><value>&COMBINE_IC;</value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>EXP</name><value><cyclestr>&EXP;</cyclestr></value></envar>
<envar><name>GRID</name><value><cyclestr>&GRID;</cyclestr></value></envar>
<envar><name>SCRIPTS</name><value>&SCRIPTS;</value></envar>
</task>
<task name="split_ic" cycledefs="icon" maxtries="2" final="false">
<command>&SCRIPTS;/split_ic.sh</command>
<jobname><cyclestr>@m@d@H_split_ic</cyclestr></jobname>
<account>gmtb</account>
<native></native>
&RESOURCES_SPLIT_IC;
<walltime>&WALLTIME_SPLIT_IC;</walltime>
<join>&STDOUT;/split_ic/<cyclestr>@m@d@H_split_ic_&EXP;_&CCPP_SUITE;.out</cyclestr></join>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_3</name><value><cyclestr offset="3:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_6</name><value><cyclestr offset="6:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_9</name><value><cyclestr offset="9:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>ICON_IC</name><value>&ICON_IC;</value></envar>
<envar><name>COMBINE_IC</name><value>&COMBINE_IC;</value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>SCRIPTS</name><value>&SCRIPTS;</value></envar>
<envar><name>SPLIT_IC</name><value>&SPLIT_IC;</value></envar>
<envar><name>SCM_RESULTS</name><value>&SCM_RESULTS;</value></envar>
<envar><name>RUN_DIR</name><value>&RUN_DIR;</value></envar>
<envar><name>CCPP_SUITE</name><value>&CCPP_SUITE;</value></envar>
<envar><name>STDOUT</name><value>&STDOUT;</value></envar>
<envar><name>SCM_ROOT</name><value>&SCM_ROOT;</value></envar>
<envar><name>EXP</name><value><cyclestr>&EXP;</cyclestr></value></envar>
<envar><name>GRID</name><value><cyclestr>&GRID;</cyclestr></value></envar>
<dependency>
<and>
<datadep age="02:00">
<cyclestr>&COMBINE_IC;/mumip_&EXP;_&GRID;_IO_0.2_@Y@m@d.@H_combined.nc</cyclestr></datadep>
<taskdep task="combine_ic"/>
</and>
</dependency>
</task>
<task name="scm_auto" cycledefs="icon" maxtries="2" >
<account>gmtb</account>
<command>&SCRIPTS;/scm_auto.sh</command>
<join>&STDOUT;/scm_auto/<cyclestr>@m@d@H_scm_auto_&EXP;_&CCPP_SUITE;.out</cyclestr></join>
<native></native>
&RESOURCES_RUN_SCM;
<walltime>&WALLTIME_RUN_SCM;</walltime>
<jobname><cyclestr>@m@d@H_scm_auto</cyclestr></jobname>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_3</name><value><cyclestr offset="3:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_6</name><value><cyclestr offset="6:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_9</name><value><cyclestr offset="9:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>ICON_IC</name><value>&ICON_IC;</value></envar>
<envar><name>COMBINE_IC</name><value>&COMBINE_IC;</value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>SCRIPTS</name><value>&SCRIPTS;</value></envar>
<envar><name>SPLIT_IC</name><value>&SPLIT_IC;</value></envar>
<envar><name>SCM_RESULTS</name><value>&SCM_RESULTS;</value></envar>
<envar><name>RUN_DIR</name><value>&RUN_DIR;</value></envar>
<envar><name>CCPP_SUITE</name><value>&CCPP_SUITE;</value></envar>
<envar><name>STDOUT</name><value>&STDOUT;</value></envar>
<envar><name>SCM_ROOT</name><value>&SCM_ROOT;</value></envar>
<envar><name>EXP</name><value><cyclestr>&EXP;</cyclestr></value></envar>
<envar><name>GRID</name><value><cyclestr>&GRID;</cyclestr></value></envar>
<envar><name>lats</name><value>#lats#</value></envar>
<envar><name>late</name><value>#late#</value></envar>
<dependency>
<and>
<taskdep task="split_ic"/>
</and>
</dependency>
</task>
<task name="scm_auto2" cycledefs="icon" maxtries="2" >
<account>gmtb</account>
<command>&SCRIPTS;/scm_auto2.sh</command>
<join>&STDOUT;/scm_auto/<cyclestr>@m@d@H_scm_auto2_&EXP;_&CCPP_SUITE;.out</cyclestr></join>
<native></native>
&RESOURCES_RUN_SCM;
<walltime>&WALLTIME_RUN_SCM;</walltime>
<jobname><cyclestr>@m@d@H_scm_auto2</cyclestr></jobname>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_3</name><value><cyclestr offset="3:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_6</name><value><cyclestr offset="6:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_9</name><value><cyclestr offset="9:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>ICON_IC</name><value>&ICON_IC;</value></envar>
<envar><name>COMBINE_IC</name><value>&COMBINE_IC;</value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>SCRIPTS</name><value>&SCRIPTS;</value></envar>
<envar><name>SPLIT_IC</name><value>&SPLIT_IC;</value></envar>
<envar><name>SCM_RESULTS</name><value>&SCM_RESULTS;</value></envar>
<envar><name>RUN_DIR</name><value>&RUN_DIR;</value></envar>
<envar><name>CCPP_SUITE</name><value>&CCPP_SUITE;</value></envar>
<envar><name>STDOUT</name><value>&STDOUT;</value></envar>
<envar><name>SCM_ROOT</name><value>&SCM_ROOT;</value></envar>
<envar><name>EXP</name><value><cyclestr>&EXP;</cyclestr></value></envar>
<envar><name>GRID</name><value><cyclestr>&GRID;</cyclestr></value></envar>
<envar><name>lats</name><value>#lats#</value></envar>
<envar><name>late</name><value>#late#</value></envar>
<dependency>
<and>
<datadep age="02:00">
<cyclestr>&SPLIT_IC;/@m_@d_@H/lat_0/mumip_&EXP;_&GRID;_IO_0.2_@Y@m@d.@H_combined_lat0_lon219.nc</cyclestr>
</datadep>
<datadep age="02:00">
<cyclestr>&SPLIT_IC;/@m_@d_@H/lat_199/mumip_&EXP;_&GRID;_IO_0.2_@Y@m@d.@H_combined_lat199_lon219.nc</cyclestr>
</datadep>
<taskdep task="split_ic"/>
</and>
</dependency>
</task>
<task name="concate_inst" cycledefs="icon" maxtries="2" final="false">
<command>&SCRIPTS;/concate_inst.sh</command>
<jobname><cyclestr>@m@d@H_inst_&EXP;_&CCPP_SUITE;.out</cyclestr></jobname>
<account>gmtb</account>
<native></native>
&RESOURCES_CONCATE_INST;
<walltime>&WALLTIME_CONCATE_INST;</walltime>
<join>&STDOUT;/concate_inst/<cyclestr>@m@d@H_&EXP;_&CCPP_SUITE;_inst.out</cyclestr></join>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_3</name><value><cyclestr offset="3:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_6</name><value><cyclestr offset="6:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_9</name><value><cyclestr offset="9:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>ICON_IC</name><value>&ICON_IC;</value></envar>
<envar><name>COMBINE_IC</name><value>&COMBINE_IC;</value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>SCRIPTS</name><value>&SCRIPTS;</value></envar>
<envar><name>PYSCRIPTS</name><value>&PYSCRIPTS;</value></envar>
<envar><name>CONCATE_OUTPUT</name><value>&CONCATE_OUTPUT;</value></envar>
<envar><name>SCM_RESULTS</name><value>&SCM_RESULTS;</value></envar>
<envar><name>CCPP_SUITE</name><value>&CCPP_SUITE;</value></envar>
<envar><name>EXP</name><value><cyclestr>&EXP;</cyclestr></value></envar>
<envar><name>GRID</name><value><cyclestr>&GRID;</cyclestr></value></envar>
<dependency>
<and>
<datadep age="02:00">
<cyclestr>&SCM_RESULTS;/@m_@d_@H/lat_199/mumip_&EXP;_scm_@Y@m@d.@H_lat199_lon219_&CCPP_SUITE;.nc</cyclestr>
</datadep>
<taskdep task="scm_auto"/>
<taskdep task="scm_auto2"/>
</and>
</dependency>
</task>
<task name="concate_accum" cycledefs="icon" maxtries="1" final="false">
<command>&SCRIPTS;/concate_accum.sh</command>
<jobname><cyclestr>@m@d@H_accum</cyclestr></jobname>
<account>gmtb</account>
<native></native>
&RESOURCES_CONCATE_ACCUM;
<walltime>&WALLTIME_CONCATE_ACCUM;</walltime>
<join>&STDOUT;/concate_accum/<cyclestr>@m@d@H_&EXP;_&CCPP_SUITE;accum.out</cyclestr></join>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_3</name><value><cyclestr offset="3:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_6</name><value><cyclestr offset="6:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_9</name><value><cyclestr offset="9:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>ICON_IC</name><value>&ICON_IC;</value></envar>
<envar><name>COMBINE_IC</name><value>&COMBINE_IC;</value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>SCRIPTS</name><value>&SCRIPTS;</value></envar>
<envar><name>PYSCRIPTS</name><value>&PYSCRIPTS;</value></envar>
<envar><name>CONCATE_OUTPUT</name><value>&CONCATE_OUTPUT;</value></envar>
<envar><name>SCM_RESULTS</name><value>&SCM_RESULTS;</value></envar>
<envar><name>CCPP_SUITE</name><value>&CCPP_SUITE;</value></envar>
<envar><name>EXP</name><value><cyclestr>&EXP;</cyclestr></value></envar>
<envar><name>GRID</name><value><cyclestr>&GRID;</cyclestr></value></envar>
<dependency>
<and>
<datadep age="02:00">
<cyclestr>&SCM_RESULTS;/@m_@d_@H/lat_199/mumip_&EXP;_scm_@Y@m@d.@H_lat199_lon219_&CCPP_SUITE;.nc</cyclestr>
</datadep>
<taskdep task="scm_auto"/>
<taskdep task="scm_auto2"/>
</and>
</dependency>
</task>
<task name="concate_accum2" cycledefs="icon" maxtries="2" final="false">
<command>&SCRIPTS;/concate_accum2.sh</command>
<jobname><cyclestr>@m@d@H_accum</cyclestr></jobname>
<account>gmtb</account>
<native></native>
&RESOURCES_CONCATE_ACCUM2;
<walltime>&WALLTIME_CONCATE_ACCUM2;</walltime>
<join>&STDOUT;/concate_accum/<cyclestr>@m@d@H_&EXP;_&CCPP_SUITE;_accum2.out</cyclestr></join>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_3</name><value><cyclestr offset="3:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_6</name><value><cyclestr offset="6:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_9</name><value><cyclestr offset="9:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>ICON_IC</name><value>&ICON_IC;</value></envar>
<envar><name>COMBINE_IC</name><value>&COMBINE_IC;</value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>SCRIPTS</name><value>&SCRIPTS;</value></envar>
<envar><name>PYSCRIPTS</name><value>&PYSCRIPTS;</value></envar>
<envar><name>CONCATE_OUTPUT</name><value>&CONCATE_OUTPUT;</value></envar>
<envar><name>SCM_RESULTS</name><value>&SCM_RESULTS;</value></envar>
<envar><name>CCPP_SUITE</name><value>&CCPP_SUITE;</value></envar>
<envar><name>EXP</name><value><cyclestr>&EXP;</cyclestr></value></envar>
<envar><name>GRID</name><value><cyclestr>&GRID;</cyclestr></value></envar>
<dependency>
<and>
<datadep age="02:00">
<cyclestr>&SCM_RESULTS;/@m_@d_@H/lat_199/mumip_&EXP;_scm_@Y@m@d.@H_lat199_lon219_&CCPP_SUITE;.nc</cyclestr>
</datadep>
<taskdep task="scm_auto"/>
<taskdep task="scm_auto2"/>
</and>
</dependency>
</task>
<task name="tar_scm" cycledefs="icon" maxtries="1" final="false">
<command>&SCRIPTS;/tar_scm.sh</command>
<jobname><cyclestr>@m@d@H_tar_scm</cyclestr></jobname>
<account>gmtb</account>
<native></native>
&RESOURCES_TAR_SCM;
<walltime>&WALLTIME_TAR_SCM;</walltime>
<join>&STDOUT;/tar_scm/<cyclestr>@m@d@H_&EXP;_&CCPP_SUITE;_tar_scm.out</cyclestr></join>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_3</name><value><cyclestr offset="3:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_6</name><value><cyclestr offset="6:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_9</name><value><cyclestr offset="9:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>ICON_IC</name><value>&ICON_IC;</value></envar>
<envar><name>COMBINE_IC</name><value>&COMBINE_IC;</value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>SCRIPTS</name><value>&SCRIPTS;</value></envar>
<envar><name>PYSCRIPTS</name><value>&PYSCRIPTS;</value></envar>
<envar><name>CONCATE_OUTPUT</name><value>&CONCATE_OUTPUT;</value></envar>
<envar><name>SCM_RESULTS</name><value>&SCM_RESULTS;</value></envar>
<envar><name>CCPP_SUITE</name><value>&CCPP_SUITE;</value></envar>
<envar><name>EXP</name><value><cyclestr>&EXP;</cyclestr></value></envar>
<envar><name>GRID</name><value><cyclestr>&GRID;</cyclestr></value></envar>
<envar><name>SPLIT_IC</name><value>&SPLIT_IC;</value></envar>
<dependency>
<and>
<taskdep task="concate_inst"/>
<taskdep task="concate_accum"/>
<taskdep task="concate_accum2"/>
</and>
</dependency>
</task>
<task name="concate_time" cycledefs="at_end" maxtries="1">
<command>&SCRIPTS;/concate_time.sh</command>
<jobname><cyclestr>@m@d@H_time</cyclestr></jobname>
<account>gmtb</account>
<partition>orion</partition>
&RESOURCES_CONCATE_TIME;
<walltime>&WALLTIME_CONCATE_TIME;</walltime>
<join>&STDOUT;/concate_time/<cyclestr>@m@d@H_time.out</cyclestr></join>
<envar><name>CDATE</name><value><cyclestr>@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_3</name><value><cyclestr offset="3:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_6</name><value><cyclestr offset="6:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>CDATE_9</name><value><cyclestr offset="9:00:00">@Y@m@d@H</cyclestr></value></envar>
<envar><name>ICON_IC</name><value>&ICON_IC;</value></envar>
<envar><name>COMBINE_IC</name><value>&COMBINE_IC;</value></envar>
<envar><name>PDY</name><value><cyclestr>@Y@m@d</cyclestr></value></envar>
<envar><name>cyc</name><value><cyclestr>@H</cyclestr></value></envar>
<envar><name>SCRIPTS</name><value>&SCRIPTS;</value></envar>
<envar><name>PYSCRIPTS</name><value>&PYSCRIPTS;</value></envar>
<envar><name>CONCATE_OUTPUT</name><value>&CONCATE_OUTPUT;</value></envar>
<envar><name>SCM_RESULTS</name><value>&SCM_RESULTS;</value></envar>
<envar><name>CCPP_SUITE</name><value>&CCPP_SUITE;</value></envar>
<dependency>
<and>
<taskdep task="concate_inst"/>
<taskdep task="concate_accum"/>
<taskdep task="concate_accum_2"/>
</and>
</dependency>
</task>
</workflow>