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data to draw the genefinder features
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mh6 committed Feb 17, 2012
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256 changes: 256 additions & 0 deletions wgf/cds.hex
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9 changes: 9 additions & 0 deletions wgf/newnem.atg
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// @(#)newnem.atg 1.2 8/23/94
siteType: atg refSeqs: genes freqType: within classDef: unique
startOff: -9 endOff: 11 numSymbs: 1 maxSymb: 5 numForced: 3 forcedPos: 0 1 2 jump: 1
*
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5 8 3 11 5 5 12 8 5 0 0 48 17 13 14 9 5 11 17 3 6
13 11 17 14 15 3 2 10 9 0 48 0 10 4 12 10 18 7 11 13 8
150 changes: 150 additions & 0 deletions wgf/newnem.codon
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// @(#)newnem.codon 1.2 8/23/94
siteType: codon refSeqs: spliced freqType: within classDef: unique
startOff: 0 endOff: 2 numSymbs: 3 maxSymb: 5 numForced: 0 forcedPos: jump: 3
class: 124 122
class: 121 123 74 72 71 73
class: 49 47 46
class: 48
class: 99 97 96 98
class: 114 112 111 113 44 42
class: 64 62 61 63
class: 39 37 36 38
class: 89 87 86 88
class: 109 107
class: 106 108 116
class: 59 57
class: 56 58
class: 34 32
class: 31 33
class: 84 82
class: 81 83
class: 119 117
class: 118
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class: 94 92 91 93
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60 changes: 60 additions & 0 deletions wgf/newnem.gene
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// @(#)newnem.gene 1.2 8/23/94
CELACI actin-I atg 114 intron5 304 intron3 351 *
CELACII actin-II atg 121 intron5 311 intron3 355 *
CELACIII actin-III atg 108 intron5 298 intron3 345 *
CELACIV1 actin-IV1 atg 124 intron5 181 *
CELACIV2 actin-IV2 intron3 60 *
CELCAL1 cal-1 atg 298 intron5 664 intron3 718 *
CELCDPK pkRmRNA atg 132 *
CELCKINII ckinaseII-alpha atg 250 intron5 289 704 891 1025 1381 1963 2100 intron3 532 762 939 1083 1837 2017 2300 *
CELCOL1AA clb-2 frame 1 intron5 65 905 intron3 122 1320 *
CELCOL1G col-1 atg 395 intron5 557 1336 intron3 658 1387 *
CELCOL2AA clb-1 frame 1 intron5 230 776 intron3 311 833 *
CELCOL2G col-2 atg 393 intron5 673 intron3 719 *
CELCOLDPY dpy-13 atg 117 intron5 198 911 intron3 255 960 *
CELDAF1 daf-1 atg 268 intron5 314 1780 2240 3191 4000 4346 4740 5059 intron3 1692 2111 2971 3242 4181 4472 4784 5370 *
CELDEB1A deb-1 atg 2441 intron5 2498 4291 5030 5278 6035 6194 6467 6878 7171 7421 9239 10231 10381 10526 10642 intron3 4182 4909 5079 5324 6085 6294 6569 7085 7227 9035 9855 10278 10434 10608 10851 *
CELFEM1 fem-1 atg 487 intron5 562 741 846 942 1098 1234 1655 1818 3437 4219 intron3 614 784 894 991 1144 1288 1700 3290 3502 4817 *
CELGAPDH G3PDH atg 384 intron5 907 1392 intron3 958 1439 *
CELGLP1A glp-1 atg 2513 intron5 2653 3629 4332 5760 6301 7342 8222 9356 intron3 3512 4268 4850 6059 6605 7748 8271 9406 *
CELGST1 gst-1mRNA atg 55 *
CELHSP16C hsp16-48 atg 1394 intron5 1532 intron3 1586 *
CELHSP16C hsp16-1a atg 3380 intron5 3506 intron3 3557 *
CELHSP16D hsp16-2 atg 1513 intron5 1639 intron3 1684 *
CELHSP3 hsp-3 atg 442 intron5 629 1149 2133 intron3 674 1386 2236 *
CELHSP4B hsp-4 intron5 61 811 intron3 106 859 *
CELHSP6 hsp-6 atg 1308 intron5 1652 2027 intron3 1717 2074 *
CELHSP70 hsp-70A atg 423 intron5 628 1465 2340 intron3 676 1658 2394 *
CELLIN12A lin-12 atg 1848 intron5 1997 3636 5308 6514 9083 9520 9695 11667 12325 intron3 3516 5250 6322 7965 9386 9565 9742 11976 12711 *
CELMAB5A mab5-mRNA frame 1 *
CELMEC3 mec-3 *
CELMSP10B msp-mRNA atg 18 *
CELMSP3L4 msp-mRNA atg 198 *
CELMTCE1 MT-Ce-mRNA1 atg 102 *
CELMTCE2 MT-Ce-mRNA2 atg 222 *
CELMYO1A myo-1 atg 3923 intron5 3992 4846 5558 5715 5935 10259 10512 10797 intron3 4572 5214 5609 5766 5981 10306 10560 11246 *
CELMYO2A myo-2 atg 1727 intron5 1790 2029 2225 2749 2986 3194 4746 7335 7532 7871 8342 intron3 1899 2083 2273 2803 3033 3453 4797 7380 7579 8059 8387 *
CELMYO3A myo-3 atg 2975 intron5 3111 4392 4618 4965 5592 10016 intron3 4179 4460 4664 5062 5655 10091 *
CELMYUNC unc-54 atg 909 intron5 972 1662 1851 2788 3652 7371 7644 7917 intron3 1533 1699 2330 2866 3704 7427 7691 7968 *
CELORFA dpy-20/unc-22-mRNA-ORF frame 1 *
CELORFB dpy-20/unc-22-mRNA-ORF frame 3 *
CELPOLII ama-1-IV atg 3014 intron5 3098 3258 3684 4876 5508 6596 7338 8431 10483 11092 11697 intron3 3147 3354 4166 5201 5814 6893 7698 8893 10883 11510 12498 *
CELPUTALB v-abl-hom frame 1 intron5 304 756 1428 1920 intron3 411 1331 1478 1978 *
CELROL6A rol-6 atg 151 intron5 292 1128 intron3 342 1177 *
CELSQT1A sqt-1 atg 151 intron5 292 intron3 338 *
CELTUBUB mec-7 atg 339 intron5 396 579 1355 1721 intron3 450 699 1401 1767 *
CELUBIA UbiA atg 867 intron5 1006 1743 2475 3207 intron3 1058 1790 2522 3255 *
CELUNC15 unc-15 atg 1856 intron5 1943 5479 6672 6805 6985 7088 8379 8791 9845 10024 intron3 5400 6614 6717 6873 7031 8158 8685 8912 9893 10072 *
CELUNC86A unc-86-1 atg 89 intron5 473 2085 2496 3209 3443 intron3 1947 2143 2933 3331 3486 *
CELUNC86A unc-86-2 atg 89 intron5 473 2496 3209 3443 intron3 2120 2933 3331 3486 *
CELVIT2 vit-2 atg 477 *
CELVIT4 vit-4 atg 466 *
CELVIT5 vit-5 atg 271 intron5 1135 1490 4575 4989 intron3 1204 1536 4623 5040 *
CELVIT6 vit-6 atg 521 intron5 616 1167 intron3 706 1223 *
CELMYOD hlh-1 atg 500 intron5 670 2660 2975 3130 3467 intron3 2381 2699 3023 3406 3782 *
CELMYOD hlh-1a atg 500 intron5 670 2660 2975 3130 3467 intron3 2381 2711 3023 3406 3782 *
CELLET60RA let-60mRNA frame 3 *
CELPTPAA tyrphosmRNA frame 1 *
CELGPA1 GPA-1 atg 236 intron5 354 1115 1526 1643 1857 2657 2873 intron3 1071 1383 1568 1769 2397 2712 3044 *
CELGPA3 GPA-3 atg 760 intron5 878 1969 2152 2328 2536 intron3 1622 2022 2197 2381 2581 *
CELGOA1 GOA-1-mRNA atg 93 *
10 changes: 10 additions & 0 deletions wgf/newnem.intron3
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// Created by colin on Wed Jan 14 09:49:06 1998
siteType: intron3 refSeqs: genes freqType: within classDef: unique
startOff: -25 endOff: 5 numSymbs: 1 maxSymb: 5 numForced: 2
forcedPos: -2 -1 jump: 1
*
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3061 3068 3110 3109 3127 3157 2958 2829 2512 2523 2980 3317 3636 3542 3643 3403 3353 3453 4699 7336 7957 5731 1110 0 0 1017 2957 2264 1990 2162 2095
9 changes: 9 additions & 0 deletions wgf/newnem.intron3_old
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// @(#)newnem.intron3 1.2 8/23/94
siteType: intron3 refSeqs: genes freqType: within classDef: unique
startOff: -25 endOff: 5 numSymbs: 1 maxSymb: 5 numForced: 2 forcedPos: -2 -1 jump: 1
*
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39 26 31 25 26 31 25 27 25 16 29 23 30 32 30 33 22 13 21 6 1 32 157 0 0 25 40 43 56 60 54
20 16 19 30 15 9 18 11 8 9 13 24 14 15 15 13 19 12 8 3 0 18 1 0 192 88 22 39 43 31 40
64 84 82 59 75 80 81 73 57 55 76 87 84 86 86 84 79 94 110 171 191 128 30 0 0 18 68 51 54 47 49
10 changes: 10 additions & 0 deletions wgf/newnem.intron5
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// Created by colin on Wed Jan 14 09:49:06 1998
siteType: intron5 refSeqs: genes freqType: within classDef: unique
startOff: -5 endOff: 25 numSymbs: 1 maxSymb: 5 numForced: 2
forcedPos: 1 2 jump: 1
*
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2319 2477 2300 1376 1412 1200 0 8178 1348 1446 954 5170 4270 3969 4024 3683 3320 3302 3358 3309 3243 3310 3279 3300 3318 3163 3203 3218 3095 3119 3068
9 changes: 9 additions & 0 deletions wgf/newnem.intron5_old
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// @(#)newnem.intron5 1.2 8/23/94
siteType: intron5 refSeqs: genes freqType: within classDef: unique
startOff: -5 endOff: 25 numSymbs: 1 maxSymb: 5 numForced: 2 forcedPos: 1 2 jump: 1
*
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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45 30 42 41 12 128 192 0 50 16 148 11 23 12 17 20 25 24 21 26 26 25 29 24 24 31 26 26 28 26 37
51 59 45 24 32 26 0 192 25 21 16 129 107 99 95 92 75 75 100 79 82 79 83 80 81 63 82 70 73 70 71
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