Patched in the changes from #96 and #97

WormBase · Feb 27, 2019 · 4514afd · 4514afd
1 parent dc49f05
commit 4514afd
Showing 1 changed file with 8 additions and 1 deletion.
diff --git a/wspec/models.wrm.annot b/wspec/models.wrm.annot
@@ -2941,7 +2941,9 @@
                 Short_name ?Text #Evidence               //?Phenotype_name XREF Short_name_for #Evidence
            Assay UNIQUE ?Text #Evidence
            Remark ?Text #Evidence
-           Related_phenotypes Specialisation_of ?Phenotype OUTXREF Generalisation_of
+           Related_phenotypes Replaced_by ?Phenotype XREF Replaces
+                              Replaces ?Phenotype XREF Replaced_by
+                              Specialisation_of ?Phenotype OUTXREF Generalisation_of
                               Generalisation_of ?Phenotype INXREF Specialisation_of
                               Dead Alternate_phenotype ?Phenotype    // tad killed because empty reinstated as no longer empty pad.
            Attribute_of RNAi ?RNAi INXREF Phenotype
@@ -3769,10 +3771,12 @@
                                   Genotype
                                   Tissue
                                   Treatment
+             Concentration ?Text
              Expression_cluster_RNAseq ?Expression_cluster INXREF RNAseq
              Expression_cluster_tiling_array ?Expression_cluster INXREF Tiling_array
              Expression_cluster_qPCR ?Expression_cluster INXREF qPCR  //added by Wen for qPCR curation
              Gene_cluster ?Gene_cluster INXREF Analysis
+             Molecule ?Molecule XREF Analysis
              Species_in_analysis ?Species OUTXREF In_analysis
              Reference ?Paper OUTXREF Describes_analysis
              Conducted_by ?Person OUTXREF Conducted                // not always the same as the author of the paper - eg Erich running OrthoMCL
@@ -3791,6 +3795,8 @@
                       Unknown
            Food Text
            Exposure_time Text
+           Detection_method ?Text #Evidence //NMR, MALDI-MS, HPLC-UV, shotgun lipidomics
+           Extraction_method ?Text #Evidence //MeOH, exometabolome, MeOH/Chloroform, 5% trichloroacetic acid
            Species UNIQUE ?Species
            Strain ?Strain // added for Microarry_result [030127 krb]
            Preparation ?Text // added for Microarray_result [030127 krb]
@@ -3829,6 +3835,7 @@
                       Predicted #Evidence
           Detection_method ?Text #Evidence //NMR, MALDI-MS, HPLC-UV, shotgun lipidomics
           Extraction_method ?Text #Evidence //MeOH, exometabolome, MeOH/Chloroform, 5% trichloroacetic acid
+          Analysis ?Analysis XREF Molecule
           Nonspecies_source ?Text
           Chemical_synthesis #Evidence
           Endogenous_in ?Species #Evidence