Update submit_busco_and_cegma_jobs.sh

WormBase · Apr 28, 2023 · 12b5576 · 12b5576
1 parent cd2baec
commit 12b5576
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/parasite/scripts/production/core-creation/submit_busco_and_cegma_jobs.sh b/parasite/scripts/production/core-creation/submit_busco_and_cegma_jobs.sh
@@ -49,7 +49,7 @@ submit_busco_update_assembly() {
    -o $log/$species.%J.out \
    -e $log/$species.%J.err \
    -n 8 -M${MEM_MB} -R "select[mem > ${MEM_MB}] rusage[mem=${MEM_MB}]" \
-   bash -x $WORM_CODE/parasite/scripts/production/core-creation/busco-assembly.sh ${species}_${bioproject} $fasta $core_db
+   bash -x $WORM_CODE/parasite/scripts/production/core-creation/busco-assembly.sh ${species}_${full_bioproject} $fasta $core_db
 }
 
 submit_busco_annotation() {
@@ -146,4 +146,4 @@ for this_core_db in ${ALL_CORE_DBS} ; do
       meta_table_has_key_pattern_core_db %annotation.busco3% $this_core_db || { submit_busco_annotation $core_db; echo "Running BUSCO Annotation for $this_core_db"; }
       meta_table_has_key_pattern_core_db %assembly.busco3% $this_core_db || { submit_busco $this_core_db; echo "Running BUSCO Assembly for $this_core_db"; }
   fi
-done
+done