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Update to the was that Transcription_factors are connected with Featu…
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…res as the original only allowed for one feature to be connected and the model assumed it was binding_site which wasn't true in all cases. closes #25
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Paul-Davis committed Feb 9, 2016
1 parent df39a26 commit 0b31bc9
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions wspec/models.wrm
Original file line number Diff line number Diff line change
Expand Up @@ -1881,8 +1881,8 @@
Associated_with_expression_pattern ?Expr_pattern XREF Associated_feature #Evidence
Associated_with_Feature ?Feature XREF Associated_with_Feature #Evidence
Associated_with_construct ?Construct XREF Sequence_feature
Associated_with_transcription_factor ?Transcription_factor XREF Associated_feature #Evidence
Bound_by_product_of ?Gene XREF Gene_product_binds #Evidence //pad added this to show what gene it binds
Transcription_factor UNIQUE ?Transcription_factor XREF Binding_site
Confidential_remark ?Text //pad
Remark ?Text #Evidence
Method UNIQUE ?Method
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Associated_with_gene ?Gene XREF Associated_transcription_factor #Evidence
Type Text #Evidence
Remark Text #Evidence
Binding_site ?Feature XREF Transcription_factor
Associated_feature ?Feature XREF Associated_with_transcription_factor #Evidence

////////////////////////////////////////////////////////////////////////////////////////////
//
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2 comments on commit 0b31bc9

@Paul-Davis
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way* typo in commit :(

@Paul-Davis
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Geneace dump files possibly effected

Transcription_factor -> Associated_with_transcription_factor
dump_2016-02-09_A.208.ace
dump_2016-02-09_A.211.ace
dump_2016-02-09_A.212.ace
dump_2016-02-09_A.213.ace
dump_2016-02-09_A.214.ace
dump_2016-02-09_A.215.ace
dump_2016-02-09_A.216.ace
dump_2016-02-09_A.217.ace
dump_2016-02-09_A.218.ace
dump_2016-02-09_A.219.ace
dump_2016-02-09_A.220.ace
dump_2016-02-09_A.221.ace
dump_2016-02-09_A.222.ace
dump_2016-02-09_A.223.ace
dump_2016-02-09_A.224.ace
dump_2016-02-09_A.225.ace
dump_2016-02-09_A.226.ace
dump_2016-02-09_A.227.ace

Same as above and Binding_site -> Associated_feature
dump_2016-02-09_A.228.ace

All these are Gene::TF no change needed
dump_2016-02-09_A.10.ace
dump_2016-02-09_A.11.ace
dump_2016-02-09_A.12.ace
dump_2016-02-09_A.13.ace
dump_2016-02-09_A.14.ace
dump_2016-02-09_A.15.ace
dump_2016-02-09_A.16.ace
dump_2016-02-09_A.17.ace
dump_2016-02-09_A.18.ace
dump_2016-02-09_A.20.ace
dump_2016-02-09_A.21.ace
dump_2016-02-09_A.22.ace
dump_2016-02-09_A.23.ace

Position_Matrix::TF no change needed
dump_2016-02-09_A.262.ace

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