Merge branch 'develop'

WormBase · Oct 10, 2016 · e0816bf · e0816bf
2 parents 8f0eb9e + cb77127
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diff --git a/CHANGES.md b/CHANGES.md
@@ -1,23 +1,59 @@
 # Change-log
 
-## 0.1.0
- - Initial version
+## 0.4.11 (unreleased)
+  - Add generated schema for WS256
+  - Ability to specify max-count and max-text for log partitioning via
+    a command line option to the `import-logs` command.
+  - Use composite lein profiles.
 
-## 0.2.0
- - Re-organised project structure.
- - Separation of components into separate repositories.
- - Added basic unit test structure.
- - Removed dependency on perl for sorting EDN files.
- - Fixed minor issues with command line interface.
 
-## 0.3.0
- - Fix error with old-namespace:
-	`acetyl` is no longer used, and has been in-lined into the
-    pseudoace package.
+## 0.4.10 (2016-07-22)
+  - Bump version of various packages, notably datomic-pro and dynamodb
+    aws-sdk libraries.
+  - Explicitly pass the annotated models filename as arguments to the CLI
+    (Annotated ACeDB models file now lives in the wormbase-pipeline repository).
 
-## 0.3.1
- - Added ability to generate a report for comparing a dump of classes to values
-   against those stored in the database.
+## 0.4.9 - (2016-07-07)
+  - When dumping .ace files, only present the leaf tag (as the `tace`
+    `Show` command) - enables easier comparisons of ace output.
+  - Add functions for dumping a query to .ace files
+
+## 0.4.8 - (2016-06-24)
+  - Fix wrong exit-code when helper.gz is encountered in `sort-edn-log.sh`.
+
+## 0.4.7 - (2016-06-20)
+  - `2_point_data` ACeDB class renamed to two-point-data in annotated
+    models (#33).
+  - Fix for circular xrefs for `phenotype` and
+    `phenotype_not_observed` in annotated models (#46)
+  - Bug in sort-edn-log.sh - Sort command now uses the temporary sort
+    directory.
+
+## 0.4.6 - (2016-06-15)
+  - Added back missing `xbin` function in `pseudoace.binning`.
+
+## 0.4.5 - (2016-06-14)
+  - Remove hard-dependency on datomic-pro.
+    Library users will now have to choose which flavour (and version)
+    of datomic to include.
+  - Made all functions in the `pseudoace.binning` module public.
+  - EDN log sorting script now allows parallel execution.
+  - Annotated models for WS255 (including generated EDN schema)
+
+## 0.4.4 - (2016-05-12)
+  - Support distributing a release bundle using either datomic-free or datomic-pro.
+  - Add generated schema for WS253, WS254
+  - Various minor fixes for the command line interface.
+
+## 0.4.3 - (2016-04-28)
+  - Rollback version of aws library.
+
+## 0.4.2 - (2016-04-28)
+  - Updated documentation.
+
+## 0.4.1 - (2016-04-28)
+  - Use `lein release` for releases.
+  - Bump versions of datomic and storage dependencies.
 
 ## 0.4 - (2016-04-25)
  - Moved sorting of logs files back out to the shell.
@@ -37,50 +73,21 @@
  - Report now generates two files per class when non-zero missing and
    added counts are encountered for easy diffing of object names.
 
-## 0.4.1 - (2016-04-28)
-  - Use `lein release` for releases.
-  - Bump versions of datomic and storage dependencies.
-
-## 0.4.2 - (2016-04-28)
-  - Updated documentation.
-
-## 0.4.3 - (2016-04-28)
-  - Rollback version of aws library.
-
-## 0.4.4 - (2016-05-12)
-  - Support distributing a release bundle using either datomic-free or datomic-pro.
-  - Add generated schema for WS253, WS254
-  - Various minor fixes for the command line interface.
-
-## 0.4.5 - (2016-06-14)
-  - Remove hard-dependency on datomic-pro.
-    Library users will now have to choose which flavour (and version)
-    of datomic to include.
-  - Made all functions in the `pseudoace.binning` module public.
-  - EDN log sorting script now allows parallel execution.
-  - Annotated models for WS255 (including generated EDN schema)
-
-## 0.4.6 - (2016-06-15)
-  - Added back missing `xbin` function in `pseudoace.binning`.
-
-## 0.4.7 - (2016-06-20)
-  - `2_point_data` ACeDB class renamed to two-point-data in annotated
-    models (#33).
-  - Fix for circular xrefs for `phenotype` and
-    `phenotype_not_observed` in annotated models (#46)
-  - Bug in sort-edn-log.sh - Sort command now uses the temporary sort
-    directory.
+## 0.3.1
+ - Added ability to generate a report for comparing a dump of classes to values
+   against those stored in the database.
 
-## 0.4.8 - (2016-06-24)
-  - Fix wrong exit-code when helper.gz is encountered in `sort-edn-log.sh`.
+## 0.3.0
+ - Fix error with old-namespace:
+	`acetyl` is no longer used, and has been in-lined into the
+    pseudoace package.
 
-## 0.4.9 - (2016-07-07)
-  - When dumping .ace files, only present the leaf tag (as the `tace`
-    `Show` command) - enables easier comparisons of ace output.
-  - Add functions for dumping a query to .ace files
+## 0.2.0
+ - Re-organised project structure.
+ - Separation of components into separate repositories.
+ - Added basic unit test structure.
+ - Removed dependency on perl for sorting EDN files.
+ - Fixed minor issues with command line interface.
 
-## 0.4.10 (2016-07-22)
-  - Bump version of various packages, notably datomic-pro and dynamodb
-    aws-sdk libraries.
-  - Explicitly pass the annotated models filename as arguments to the CLI
-    (Annotated ACeDB models file now lives in the wormbase-pipeline repository).
+## 0.1.0
+ - Initial version
diff --git a/README.md b/README.md
@@ -172,7 +172,7 @@ This process re-uses the [leiningen deployment tools][12]:
 #
 # LEIN_PROFILE can be any named lein profile (or multiple delimiter by comma),
 # examples:
-#   LEIN_PROFILE="aws"
+#   LEIN_PROFILE="ddb"
 #   LEIN_PROFILE="mysql"
 #   LEIN_PROFILE="postgresql"
 #   LEIN_PROFILE="dev