TRUNK-6083: Build and deploy docker image for openmrs-core

Dockerfile

@@ -0,0 +1,135 @@
+# syntax=docker/dockerfile:1
+
+#	This Source Code Form is subject to the terms of the Mozilla Public License, 
+#	v. 2.0. If a copy of the MPL was not distributed with this file, You can 
+#	obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under 
+#	the terms of the Healthcare Disclaimer located at http://openmrs.org/license.
+#	
+#	Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS 
+#	graphic logo is a trademark of OpenMRS Inc.
+
+### Build Stage
+FROM maven:3.8-jdk-11 as build
+WORKDIR /app
+
+ENV DEPENDENCY_PLUGIN="org.apache.maven.plugins:maven-dependency-plugin:3.3.0"
+
+# Copy poms to resolve dependencies
+COPY pom.xml .
+COPY liquibase/pom.xml ./liquibase/
+COPY tools/pom.xml ./tools/
+COPY test/pom.xml ./test/
+COPY web/pom.xml ./web/
+COPY api/pom.xml ./api/
+COPY webapp/pom.xml ./webapp/
+
+# Resolve dependencies in order to cache them and run offline builds
+RUN mvn $DEPENDENCY_PLUGIN:go-offline
+
+ARG MVN_ARGS='install'
+
+# Build the app using cached dependencies
+# Append --build-arg MVN_ARGS='install -o' to change default maven arguments
+# Build modules individually to benefit from caching
+COPY checkstyle.xml checkstyle-suppressions.xml CONTRIBUTING.md findbugs-include.xml LICENSE license-header.txt \
+ NOTICE.md README.md ruleset.xml SECURITY.md ./
+
+COPY liquibase ./liquibase/
+RUN mvn -pl liquibase $MVN_ARGS
+
+COPY tools/ ./tools/
+RUN mvn -pl tools $MVN_ARGS
+
+COPY test/ ./test/
+RUN mvn -pl test $MVN_ARGS
+
+COPY api/ ./api/
+RUN mvn -pl api $MVN_ARGS
+
+COPY web/ ./web/
+RUN mvn -pl web $MVN_ARGS
+
+COPY webapp/ ./webapp/
+RUN mvn -pl webapp $MVN_ARGS
+
+# Store dependencies for re-use when running
+# If mounting ~/.m2:/root/.m2 then the m2 repo content will be copied over from the image
+RUN cp -r /root/.m2/repository /usr/share/maven/ref/repository
+
+WORKDIR /app/webapp
+
+# Startup jetty by default for the dev image
+# TODO: Use Tomcat with spring devtools instead
+CMD ["mvn", "jetty:run", "-o"]
+
+### Production Stage
+FROM tomcat:9.0-jdk8-adoptopenjdk-hotspot
+
+RUN apt-get update && apt-get install -y zip dumb-init \
+    && apt-get clean  \
+    && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* /usr/local/tomcat/webapps/*
+
+RUN groupadd -r openmrs  \
+    && useradd --no-log-init -r -g openmrs openmrs  \
+    && chown -R openmrs $CATALINA_HOME  \
+    && mkdir -p /openmrs  \
+    && chown -R openmrs /openmrs 
+
+USER openmrs
+
+WORKDIR /openmrs
+
+# All environment variables that are available to configure on this container are listed here
+# for clarity. These list the variables supported, and the default values if not overridden
+
+# These environment variables are appended to configure the Tomcat JAVA_OPTS
+ENV OMRS_JAVA_MEMORY_OPTS="-XX:NewSize=128m"
+ENV OMRS_JAVA_SERVER_OPTS="-Dfile.encoding=UTF-8 -server -Djava.security.egd=file:/dev/./urandom -Djava.awt.headless=true -Djava.awt.headlesslib=true"
+
+# These environment variables are used to create the openmrs-server.properties file, which controls how OpenMRS initializes
+ENV OMRS_CONFIG_ADD_DEMO_DATA="false"
+ENV OMRS_CONFIG_ADMIN_USER_PASSWORD="Admin123"
+ENV OMRS_CONFIG_AUTO_UPDATE_DATABASE="true"
+ENV OMRS_CONFIG_CREATE_DATABASE_USER="false"
+ENV OMRS_CONFIG_CREATE_TABLES="false"
+ENV OMRS_CONFIG_HAS_CURRENT_OPENMRS_DATABASE="true"
+ENV OMRS_CONFIG_INSTALL_METHOD="auto"
+ENV OMRS_CONFIG_MODULE_WEB_ADMIN="true"
+
+# These variables are specific to database connections
+# Supported values for OMRS_CONFIG_CONNECTION_TYPE are "mysql" and "postgresql"
+# other values are treated as MySQL
+ENV OMRS_CONFIG_CONNECTION_TYPE="mysql"
+ENV OMRS_CONFIG_CONNECTION_USERNAME="openmrs"
+ENV OMRS_CONFIG_CONNECTION_PASSWORD="openmrs"
+ENV OMRS_CONFIG_CONNECTION_SERVER="localhost"
+ENV OMRS_CONFIG_CONNECTION_DATABASE="openmrs"
+
+# These environment variables can be used to customise the database connection.
+# Their default values depend on which database you are using.
+# OMRS_CONFIG_CONNECTION_DRIVER_CLASS
+# OMRS_CONFIG_CONNECTION_PORT
+# OMRS_CONFIG_CONNECTION_ARGS
+# OMRS_CONFIG_CONNECTION_EXTRA_ARGS
+#
+# If you really need complete control, you can just set
+# OMRS_CONFIG_CONNECTION_URL to whatever the URL should be
+
+# These environment variables are meant to enable developer settings
+# OMRS_DEV_DEBUG_PORT
+
+# Additional environment variables as needed. This should match the name of the distribution supplied OpenMRS war file
+ENV OMRS_WEBAPP_NAME="openmrs"
+
+# Copy in the start-up scripts
+COPY --chmod=0755 wait-for-it.sh startup.sh /usr/local/tomcat/
+
+RUN sed -i '/Connector port="8080"/a URIEncoding="UTF-8" relaxedPathChars="[]|" relaxedQueryChars="[]|{}^\`"<>"' /usr/local/tomcat/conf/server.xml
+
+# Copy the app
+COPY --from=build /app/webapp/target/openmrs.war /openmrs/distribution/openmrs_core/openmrs.war
+
+EXPOSE 8080
+
+CMD ["dumb-init", "/usr/local/tomcat/startup.sh"]
+

docker-compose.override.yml

@@ -0,0 +1,27 @@
+version: "3.7"
+
+#    This Source Code Form is subject to the terms of the Mozilla Public License,
+#    v. 2.0. If a copy of the MPL was not distributed with this file, You can
+#    obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under
+#    the terms of the Healthcare Disclaimer located at http://openmrs.org/license.
+#    
+#    Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS
+#    graphic logo is a trademark of OpenMRS Inc.
+
+services:
+    db:
+        ports:
+            - "3306:3306"
+        restart: "no"
+
+    openmrs-core:
+        image: openmrs-core:dev
+        build:
+            target: build
+            context: .
+        ports:
+            - "8080:8080"
+            - "8000:8000"
+        volumes:
+            - ~/.m2:/root/.m2
+        restart: "no"

docker-compose.yml

@@ -0,0 +1,45 @@
+version: "3.7"
+
+#    This Source Code Form is subject to the terms of the Mozilla Public License,
+#    v. 2.0. If a copy of the MPL was not distributed with this file, You can
+#    obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under
+#    the terms of the Healthcare Disclaimer located at http://openmrs.org/license.
+#    
+#    Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS
+#    graphic logo is a trademark of OpenMRS Inc.
+
+services:
+    db:
+        image: mariadb:10.3
+        command: "mysqld --character-set-server=utf8 --collation-server=utf8_general_ci"
+        environment:
+            MYSQL_DATABASE: ${OPENMRS_DB_NAME:-openmrs}
+            MYSQL_USER: ${OPENMRS_DB_USER:-openmrs}
+            MYSQL_PASSWORD: ${OPENMRS_DB_PASSWORD:-openmrs}
+            MYSQL_ROOT_PASSWORD: ${OPENMRS_DB_ROOT_PASSWORD:-openmrs}
+        volumes:
+            - db-data:/var/lib/mysql
+
+    openmrs-core:
+        image: openmrs-core:latest
+        build: .
+        depends_on:
+            - db
+        ports:
+            - "8080:8080"
+        environment:
+            OMRS_CONFIG_MODULE_WEB_ADMIN: "true"
+            OMRS_CONFIG_AUTO_UPDATE_DATABASE: "true"
+            OMRS_CONFIG_CREATE_TABLES: "true"
+            OMRS_CONFIG_CONNECTION_SERVER: db
+            OMRS_CONFIG_CONNECTION_DATABASE: ${OPENMRS_DB_NAME:-openmrs}
+            OMRS_CONFIG_CONNECTION_USERNAME: ${OPENMRS_DB_USER:-openmrs}
+            OMRS_CONFIG_CONNECTION_PASSWORD: ${OPENMRS_DB_PASSWORD:-openmrs}
+        healthcheck:
+            test: ["CMD", "curl", "-f", "http://localhost:8080/openmrs"]
+            timeout: 5s
+        volumes:
+            - ./target/openmrs-data:/openmrs/data/:z
+
+volumes:
+    db-data:

license-header.txt

@@ -4,4 +4,6 @@ obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under
 the terms of the Healthcare Disclaimer located at http://openmrs.org/license.
 
 Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS 
-graphic logo is a trademark of OpenMRS Inc.
+graphic logo is a trademark of OpenMRS Inc.
+
+

startup.sh

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+#!/bin/bash -eu
+#	This Source Code Form is subject to the terms of the Mozilla Public License, 
+#	v. 2.0. If a copy of the MPL was not distributed with this file, You can 
+#	obtain one at http://mozilla.org/MPL/2.0/. OpenMRS is also distributed under 
+#	the terms of the Healthcare Disclaimer located at http://openmrs.org/license.
+#	
+#	Copyright (C) OpenMRS Inc. OpenMRS is a registered trademark and the OpenMRS 
+#	graphic logo is a trademark of OpenMRS Inc.
+
+echo "Initiating OpenMRS startup"
+
+# This startup script is responsible for fully preparing the OpenMRS Tomcat environment.
+
+OMRS_HOME="/openmrs"
+OMRS_WEBAPP_NAME=${OMRS_WEBAPP_NAME:-openmrs}
+
+# A volume mount is expected that contains distribution artifacts.  The expected format is shown in these environment vars.
+
+OMRS_DISTRO_DIR="$OMRS_HOME/distribution"
+OMRS_DISTRO_CORE="$OMRS_DISTRO_DIR/openmrs_core"
+OMRS_DISTRO_MODULES="$OMRS_DISTRO_DIR/openmrs_modules"
+OMRS_DISTRO_OWAS="$OMRS_DISTRO_DIR/openmrs_owas"
+OMRS_DISTRO_CONFIG="$OMRS_DISTRO_DIR/openmrs_config"
+
+# Each of these mounted directories are used to populate expected configurations on the server, defined here
+
+OMRS_DATA_DIR="$OMRS_HOME/data"
+OMRS_MODULES_DIR="$OMRS_DATA_DIR/modules"
+OMRS_OWA_DIR="$OMRS_DATA_DIR/owa"
+OMRS_CONFIG_DIR="$OMRS_DATA_DIR/configuration"
+
+OMRS_SERVER_PROPERTIES_FILE="$OMRS_HOME/$OMRS_WEBAPP_NAME-server.properties"
+OMRS_RUNTIME_PROPERTIES_FILE="$OMRS_DATA_DIR/$OMRS_WEBAPP_NAME-runtime.properties"
+
+TOMCAT_DIR="/usr/local/tomcat"
+TOMCAT_WEBAPPS_DIR="$TOMCAT_DIR/webapps"
+TOMCAT_WORK_DIR="$TOMCAT_DIR/work"
+TOMCAT_TEMP_DIR="$TOMCAT_DIR/temp"
+TOMCAT_SETENV_FILE="$TOMCAT_DIR/bin/setenv.sh"
+
+echo "Clearing out existing directories of any previous artifacts"
+
+rm -fR $TOMCAT_WEBAPPS_DIR;
+rm -fR $OMRS_MODULES_DIR;
+rm -fR $OMRS_OWA_DIR
+rm -fR $OMRS_CONFIG_DIR
+rm -fR $TOMCAT_WORK_DIR
+rm -fR $TOMCAT_TEMP_DIR
+
+mkdir -p $TOMCAT_TEMP_DIR
+
+echo "Loading artifacts into appropriate locations"
+
+cp -r $OMRS_DISTRO_CORE $TOMCAT_WEBAPPS_DIR
+[ -d "$OMRS_DISTRO_MODULES" ] && cp -r $OMRS_DISTRO_MODULES $OMRS_MODULES_DIR
+[ -d "$OMRS_DISTRO_OWAS" ] && cp -r $OMRS_DISTRO_OWAS $OMRS_OWA_DIR
+[ -d "$OMRS_DISTRO_CONFIG" ] && cp -r $OMRS_DISTRO_CONFIG $OMRS_CONFIG_DIR
+
+# setup database configuration properties
+# Setup database configuration properties
+OMRS_CONFIG_DATABASE="${OMRS_CONFIG_DATABASE:-mysql}"
+OMRS_CONFIG_CONNECTION_SERVER="${OMRS_CONFIG_CONNECTION_SERVER:-localhost}"
+OMRS_CONFIG_CONNECTION_DATABASE="${OMRS_CONFIG_CONNECTION_DATABASE:-openmrs}"
+OMRS_CONFIG_CONNECTION_EXTRA_ARGS="${OMRS_CONFIG_CONNECTION_EXTRA_ARGS-}"
+
+if [[ -z $OMRS_CONFIG_DATABASE || "$OMRS_CONFIG_DATABASE" == "mysql" ]]; then
+  OMRS_CONFIG_JDBC_URL_PROTOCOL=mysql
+  OMRS_CONFIG_CONNECTION_DRIVER_CLASS="${OMRS_CONFIG_CONNECTION_DRIVER_CLASS:-com.mysql.jdbc.Driver}"
+  OMRS_CONFIG_CONNECTION_PORT="${OMRS_CONFIG_CONNECTION_PORT:-3306}"
+  OMRS_CONFIG_CONNECTION_ARGS="${OMRS_CONFIG_CONNECTION_ARGS:-?autoReconnect=true&sessionVariables=default_storage_engine=InnoDB&useUnicode=true&characterEncoding=UTF-8}"
+elif [[ "$OMRS_CONFIG_DATABASE" == "postgresql" ]]; then
+  OMRS_CONFIG_JDBC_URL_PROTOCOL=postgresql
+  OMRS_CONFIG_CONNECTION_DRIVER_CLASS="${OMRS_CONFIG_CONNECTION_DRIVER_CLASS:-org.postgresql.Driver}"
+  OMRS_CONFIG_CONNECTION_PORT="${OMRS_CONFIG_CONNECTION_PORT:-5432}"
+else
+  echo "Unknown database type $OMRS_CONFIG_DATABASE. Using properties for MySQL"
+  OMRS_CONFIG_JDBC_URL_PROTOCOL=mysql
+  OMRS_CONFIG_CONNECTION_DRIVER_CLASS="${OMRS_CONFIG_CONNECTION_DRIVER_CLASS:-com.mysql.jdbc.Driver}"
+  OMRS_CONFIG_CONNECTION_PORT="${OMRS_CONFIG_CONNECTION_PORT:-3306}"
+  OMRS_CONFIG_CONNECTION_ARGS="${OMRS_CONFIG_CONNECTION_ARGS:-?autoReconnect=true&sessionVariables=default_storage_engine=InnoDB&useUnicode=true&characterEncoding=UTF-8}"
+fi
+
+# Build the JDBC URL using the above properties
+OMRS_CONFIG_CONNECTION_URL="${OMRS_CONFIG_CONNECTION_URL:-jdbc:${OMRS_CONFIG_JDBC_URL_PROTOCOL}://${OMRS_CONFIG_CONNECTION_SERVER}:${OMRS_CONFIG_CONNECTION_PORT}/${OMRS_CONFIG_CONNECTION_DATABASE}${OMRS_CONFIG_CONNECTION_ARGS}${OMRS_CONFIG_CONNECTION_EXTRA_ARGS}}"
+
+echo "Writing out $OMRS_SERVER_PROPERTIES_FILE"
+
+cat > $OMRS_SERVER_PROPERTIES_FILE << EOF
+add_demo_data=${OMRS_CONFIG_ADD_DEMO_DATA}
+admin_user_password=${OMRS_CONFIG_ADMIN_USER_PASSWORD}
+auto_update_database=${OMRS_CONFIG_AUTO_UPDATE_DATABASE}
+connection.driver_class=${OMRS_CONFIG_CONNECTION_DRIVER_CLASS}
+connection.username=${OMRS_CONFIG_CONNECTION_USERNAME}
+connection.password=${OMRS_CONFIG_CONNECTION_PASSWORD}
+connection.url=${OMRS_CONFIG_CONNECTION_URL}
+create_database_user=${OMRS_CONFIG_CREATE_DATABASE_USER}
+create_tables=${OMRS_CONFIG_CREATE_TABLES}
+has_current_openmrs_database=${OMRS_CONFIG_HAS_CURRENT_OPENMRS_DATABASE}
+install_method=${OMRS_CONFIG_INSTALL_METHOD}
+module_web_admin=${OMRS_CONFIG_MODULE_WEB_ADMIN}
+module.allow_web_admin=${OMRS_CONFIG_MODULE_WEB_ADMIN}
+EOF
+
+if [ -f $OMRS_RUNTIME_PROPERTIES_FILE ]; then
+  echo "Found existing runtime properties file at $OMRS_RUNTIME_PROPERTIES_FILE.  Overwriting with $OMRS_SERVER_PROPERTIES_FILE"
+  cp $OMRS_SERVER_PROPERTIES_FILE $OMRS_RUNTIME_PROPERTIES_FILE
+fi
+
+echo "Writing out $TOMCAT_SETENV_FILE file"
+
+JAVA_OPTS="$OMRS_JAVA_SERVER_OPTS"
+CATALINA_OPTS="$OMRS_JAVA_MEMORY_OPTS -DOPENMRS_INSTALLATION_SCRIPT=$OMRS_SERVER_PROPERTIES_FILE -DOPENMRS_APPLICATION_DATA_DIRECTORY=$OMRS_DATA_DIR/"
+
+if [ -n "${OMRS_DEV_DEBUG_PORT-}" ]; then
+  echo "Enabling debugging on port $OMRS_DEV_DEBUG_PORT"
+  CATALINA_OPTS="$CATALINA_OPTS -agentlib:jdwp=transport=dt_socket,server=y,suspend=n,address=$OMRS_DEV_DEBUG_PORT"
+fi
+
+cat > $TOMCAT_SETENV_FILE << EOF
+export JAVA_OPTS="$JAVA_OPTS"
+export CATALINA_OPTS="$CATALINA_OPTS"
+EOF
+
+echo "Waiting for database to initialize..."
+
+/usr/local/tomcat/wait-for-it.sh --timeout=3600 "${OMRS_CONFIG_CONNECTION_SERVER}:${OMRS_CONFIG_CONNECTION_PORT}"
+
+echo "Starting up OpenMRS..."
+
+/usr/local/tomcat/bin/catalina.sh run &
+
+# Trigger first filter to start data importation
+sleep 15
+curl -sL "http://localhost:8080/$OMRS_WEBAPP_NAME/" > /dev/null
+sleep 15
+
+# bring tomcat process to foreground again
+wait ${!}