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Vini2 committed Aug 18, 2023
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# CheckS: Checking the presence of a species in a metagenomics sample with known taxonomic composition

![GitHub](https://img.shields.io/github/license/Vini2/CheckS)


CheckS is a pipeline to check the presence of a species in NGS data (reads and assembled contigs) of a metagenomics sample, provided its reference genome and the reference genomes of the other known species.

CheckS carries out four analysis steps to determine the presence of a query reference genome as follows.
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