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Co-localization reports #33

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stevevanhooser opened this issue Mar 23, 2020 · 1 comment
Open

Co-localization reports #33

stevevanhooser opened this issue Mar 23, 2020 · 1 comment
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@stevevanhooser
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Should report #paired and #unpaired, especially useful for 3-d colocalization

@stevevanhooser stevevanhooser self-assigned this Mar 23, 2020
@stevevanhooser
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@dlwise : I added at_colocalization_summary. Can you check it to see if it provides the outputs you are seeking? The data I got only had 2-way colocalization.

It produces (for me):

[out,msg] = at_colocalization_summary(the_atdir, colname);

out

out =

struct with fields:

          totalA: 89
          totalB: 54
   NumAPaired_ab: 57
   NumBPaired_ab: 45
NumANotPaired_ab: 32
NumBNotPaired_ab: 9
   NumAPaired_ba: 57
   NumBPaired_ba: 45
NumANotPaired_ba: 32
NumBNotPaired_ba: 9

msg =

'AoB:Number of As paired with at least one B: 57; AoB:Number of Bs paired with at least one A: 45; AoB:Number of As not paired with at least one B: 32; AoB:Number of Bs not paired with at least one A: 9; BoA:Number of As paired with at least one B: 57; BoA:Number of Bs paired with at least one A: 45; BoA:Number of As not paired with at least one B: 32; BoA:Number of Bs not paired with at least one A: 9; '

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