Matlab app for analysis of high density imaging data like that from Array Tomography
Requires http://www.github.com/VH-Lab/vhlab-toolbox-matlab
Requires: Matlab 2017b or later
This can be used with directories that have the following subfolders:
images/
named_images/
(either single image or individual images of channels)
rois/
named_rois/
rois.mat - ROI data structure
L.mat - Labeled image
history.mat - list of actions that led to these rois
labels - labels of these rois
CLAs/
One needs to initially set up a subfolder called images/named_images
For example, if one has two TIF stacks named 'PSD-channel.tif' and 'YFP-channel.tif', one would create the following directories:
myexperiment/
images/
PSD_raw/
PSD-channel.tif
YFP_raw/
YFP-channel.tif