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Dawa Ometto edited this page Jan 31, 2024 · 2 revisions

A draft overview of our Catalog Items. Eventually this information should be on our VRE documentation page. The idea is that information in the tables below links to general instructions -- for instance, "GUI" will link to general documentation for logging in to SRC workspaces via Guacamole or RDP, "Yoda (Webdav)" will link to general instructions for mounting Yoda on a workspace, etc.

Programming and Modelling Environments

Name Software Available Login Methods Configure Custom Packages GPU Data Transfer Operating System Support
Python Workbench Python, Pyenv, Poetry, Miniconda GUI, CLI Yes No ResearchDrive, irods-cli, Yoda (webdav) Ubuntu Linux UU RDM
Python Workbench CUDA Python, Pyenv, Poetry, Miniconda GUI, CLI Yes Yes ResearchDrive, irods-cli, Yoda (webdav) Ubuntu Linux UU RDM
R-Studio R-Studio Web Application No Yes ResearchDrive, irods-cli Ubuntu Linux SURF
Jupyter Notebook Python, R, Julia, Jupuyter Lab Web Application Yes Yes ResearchDrive, irods-cli Ubuntu Linux SURF
Matlab Matlab GUI No Yes? ResearchDrive, irods-cli, Yoda (webdav) Ubuntu Linux UU RDM
Stata Stata GUI No Yes? ResearchDrive, irods-cli, Yoda (webdav) Ubuntu Linux UU RDM
Stata Stata GUI No Yes? ResearchDrive Windows Server 2019 UU RDM

Analysis Tools and Utilities

ASReview Grobid WhisperX

Data Processing and Pipelines

?

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