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Iss51 #53

Merged
merged 30 commits into from
Sep 19, 2024
Merged

Iss51 #53

merged 30 commits into from
Sep 19, 2024

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arivers
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@arivers arivers commented Sep 19, 2024

  • Changed settings to allow FASTQ quality scores up to 93. This prevents an error in processing some reads from PacBio, Nanopore and Element Biosciences AVITI sequencers with quality scores over 41.
  • Updated from manual software versioning to automated versioning based on git tag metadata and setuptools-scm.
  • Updated Github action workflow for QIIME 2024.5 and Python 3.9.19
  • Improved and updated installation instructions in the README file
  • Updated tests for FASTQs with high qual scores
  • Added citation information for forthcoming ITSXpress version 2 publication
  • Cleaned up some PEP formatting

@arivers
Adding versioneer in build time dependency mode
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@arivers
Removed versioneer and added setuptools-scm for build time versioning…
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…. Added Version flag to the CLI and a log line with the version.
@arivers
added support for qual scores up to 92, made modules more pep complia…
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…nt, updated install docs, updated docker, gh actions and and conda for python 3.9 since Qiime updated to 3.9.
@arivers
changed python version in dockerfile
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added events for action
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modified gh action to test itsxpress
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workflow updates
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actions test
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actions test
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Updates to tests, readme, changelog, and citations
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@arivers arivers merged commit 8d28768 into main Sep 19, 2024
5 of 6 checks passed
@arivers arivers deleted the iss51 branch September 19, 2024 19:31
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@arivers