actions test

USDA-ARS-GBRU · Sep 19, 2024 · f84bed0 · f84bed0
1 parent 4f0479a
commit f84bed0
Showing 1 changed file with 6 additions and 5 deletions.
diff --git a/.github/workflows/python-package-conda.yml b/.github/workflows/python-package-conda.yml
@@ -39,13 +39,14 @@ jobs:
         pip install .
     - name: Test with pytest
       run: |
-        echo $CONDA/bin >> $GITHUB_PATH
-        echo $CONDA_PREFIX
-        echo $GITHUB_PATH
+        conda activate testenv
+        conda info
         ls $CONDA/bin
         $CONDA/bin/pytest 
     - name: Test qiime install
       run: |
-        qiime dev refresch-cache
-        qiime itsxpress --help
+        conda activate testenv
+        conda info
+        $CONDA/bin/qiime dev refresch-cache
+        $CONDA/bin/qiime itsxpress --help