New pyft version

build/with_fcm/arch/arch-pgi_CPU_preGPU_MFflavour.env

@@ -44,41 +44,60 @@ specificTransfos="^progs/:=:
 descTree=${TMPDIR:-/tmp}/descTree_$$
 trap "\rm -f $descTree" EXIT
 
-#Transformation to apply systematically (IAL, Méso-NH and testprogs)
+#We cannot suppress non column calls for Méso-NH, stack transformation is replaced by allocatables
+#source this file, then: "export PYFT_OPTS_MNH; check_commit_mesonh.sh --prep_code-opts '--pyft_opts_env PYFT_OPTS_MNH' ...."
 #The --wrapH is automatically set by prep_code
 #The --mnhExpand is controlled by the different check_commit_* scripts
 #--addIncludes must be before --descTree because --addIncludes removes a wrong "file" node
-common_opts="--tree . --addIncludes --descTree $descTree --simplify --enableCache" #General options
-common_opts="$common_opts --inlineContainedSubroutinesPHYEX" #Inlining
-common_opts="$common_opts --deleteDrHook --deleteBudgetDDH" #Not available on GPU
-common_opts="$common_opts --addACC_routine_seq" #add 'acc routine' directive
-common_opts="$common_opts --stopScopes sub:SHALLOW_MF#sub:ICE_ADJUST#sub:RAIN_ICE#sub:RAIN_ICE_OLD#sub:TURB#sub:LIMA_ADJUST_SPLIT#sub:LIMA"
-common_opts="$common_opts --setFalseIfStmt TURBN%LTURB_DIAG --setFalseIfStmt TURBN%LTURB_FLX" #remove diagnostic output
-common_opts="$common_opts --buildACCTypeHelpers"
-
-#We cannot suppress non column calls for Méso-NH, stack transformation is replaced by allocatables
-#source this file, then: "export PYFT_OPTS_MNH; check_commit_mesonh.sh --prep_code-opts '--pyft_opts_env PYFT_OPTS_MNH' ...."
-common_opts_MNH="$common_opts --addArrayParentheses --expandAllArraysPHYEX --attachArraySpecToEntity --applyCPPifdef %REPRO48 --replaceAutomaticWithAllocatable"
-PYFT_OPTS_MNH="$common_opts_MNH
+PYFT_OPTS_MNH="--tree . --addIncludes --descTree $descTree --simplify --enableCache" #General options
+PYFT_OPTS_MNH="$PYFT_OPTS_MNH --inlineContainedSubroutinesPHYEX" #Inlining
+PYFT_OPTS_MNH="$PYFT_OPTS_MNH --deleteDrHook --deleteBudgetDDH" #Not available on GPU
+PYFT_OPTS_MNH="$PYFT_OPTS_MNH --addACC_routine_seq" #add 'acc routine' directive
+PYFT_OPTS_MNH="$PYFT_OPTS_MNH --stopScopes sub:SHALLOW_MF#sub:ICE_ADJUST#sub:RAIN_ICE#sub:RAIN_ICE_OLD#sub:TURB#sub:LIMA_ADJUST_SPLIT#sub:LIMA"
+PYFT_OPTS_MNH="$PYFT_OPTS_MNH --setFalseIfStmt TURBN%LTURB_DIAG --setFalseIfStmt TURBN%LTURB_FLX" #remove diagnostic output
+PYFT_OPTS_MNH="$PYFT_OPTS_MNH --buildACCTypeHelpers"
+PYFT_OPTS_MNH="$PYFT_OPTS_MNH --addArrayParentheses --expandAllArraysPHYEX --attachArraySpecToEntity --applyCPPifdef %REPRO48 --replaceAutomaticWithAllocatable"
+PYFT_OPTS_MNH="$PYFT_OPTS_MNH
 $specificTransfos
-^turb/mode_bl_depth_diag.F90:=:--removeCall module:MODE_BL_DEPTH_DIAG/sub:BL_DEPTH_DIAG_1D BL_DEPTH_DIAG_3D $common_opts_MNH
-^micro/rain_ice.F90:=:--removeCall sub:RAIN_ICE ELEC_TENDENCIES $common_opts_MNH"
+^turb/mode_bl_depth_diag.F90:=:--removeCall module:MODE_BL_DEPTH_DIAG/sub:BL_DEPTH_DIAG_1D BL_DEPTH_DIAG_3D $PYFT_OPTS_MNH
+^micro/rain_ice.F90:=:--removeCall sub:RAIN_ICE ELEC_TENDENCIES $PYFT_OPTS_MNH"
 
 #For IAL, stack transformation is replaced by allocatables
 #source this file, then: "export PYFT_OPTS_IAL; check_commit_ial.sh --prep_code-opts '--pyft_opts_env PYFT_OPTS_IAL' ...."
-common_opts_IAL="$common_opts --addArrayParentheses --expandAllArraysPHYEX --attachArraySpecToEntity --applyCPPifdef REPRO48 --deleteNonColumnCallsPHYEX --replaceAutomaticWithAllocatable"
-PYFT_OPTS_IAL="$common_opts_IAL
+#The --wrapH is automatically set by prep_code
+#The --mnhExpand is controlled by the different check_commit_* scripts
+#--addIncludes must be before --descTree because --addIncludes removes a wrong "file" node
+PYFT_OPTS_IAL="--tree . --addIncludes --descTree $descTree --simplify --enableCache" #General options
+PYFT_OPTS_IAL="$PYFT_OPTS_IAL --inlineContainedSubroutinesPHYEX" #Inlining
+PYFT_OPTS_IAL="$PYFT_OPTS_IAL --deleteDrHook --deleteBudgetDDH" #Not available on GPU
+PYFT_OPTS_IAL="$PYFT_OPTS_IAL --addACC_routine_seq" #add 'acc routine' directive
+PYFT_OPTS_IAL="$PYFT_OPTS_IAL --stopScopes sub:SHALLOW_MF#sub:ICE_ADJUST#sub:RAIN_ICE#sub:RAIN_ICE_OLD#sub:TURB#sub:LIMA_ADJUST_SPLIT#sub:LIMA"
+PYFT_OPTS_IAL="$PYFT_OPTS_IAL --setFalseIfStmt TURBN%LTURB_DIAG --setFalseIfStmt TURBN%LTURB_FLX" #remove diagnostic output
+PYFT_OPTS_IAL="$PYFT_OPTS_IAL --buildACCTypeHelpers"
+PYFT_OPTS_IAL="$PYFT_OPTS_IAL --addArrayParentheses --expandAllArraysPHYEX --attachArraySpecToEntity --applyCPPifdef REPRO48 --deleteNonColumnCallsPHYEX --replaceAutomaticWithAllocatable"
+PYFT_OPTS_IAL="$PYFT_OPTS_IAL
 $specificTransfos
-^turb/mode_bl_depth_diag.F90:=:--removeCall module:MODE_BL_DEPTH_DIAG/sub:BL_DEPTH_DIAG_1D BL_DEPTH_DIAG_3D $common_opts_IAL
-^micro/rain_ice.F90:=:--removeCall sub:RAIN_ICE ELEC_TENDENCIES $common_opts_IAL"
+^turb/mode_bl_depth_diag.F90:=:--removeCall module:MODE_BL_DEPTH_DIAG/sub:BL_DEPTH_DIAG_1D BL_DEPTH_DIAG_3D $PYFT_OPTS_IAL
+^micro/rain_ice.F90:=:--removeCall sub:RAIN_ICE ELEC_TENDENCIES $PYFT_OPTS_IAL"
 
 #For testprogs
 #check_commit_testprogs.sh -a <this conf>
 #For --removeIJDim, the USE_COLCALL compilation key must be set in the *.fcm file
 #--removeIJDim internally applies --addArrayParentheses --expandAllArraysPHYEX and, if --simplify is set, attachArraySpecToEntity
-common_opts="$common_opts --applyCPPifdef REPRO48 --deleteNonColumnCallsPHYEX --removeIJDim --addStack $stackMode"
-PYFT_OPTS="$common_opts
+#The --wrapH is automatically set by prep_code
+#The --mnhExpand is controlled by the different check_commit_* scripts
+#--addIncludes must be before --descTree because --addIncludes removes a wrong "file" node
+PYFT_OPTS="--tree . --addIncludes --descTree $descTree --simplify --enableCache" #General options
+PYFT_OPTS="$PYFT_OPTS --inlineContainedSubroutinesPHYEX" #Inlining
+PYFT_OPTS="$PYFT_OPTS --deleteDrHook --deleteBudgetDDH" #Not available on GPU
+#PYFT_OPTS="$PYFT_OPTS --addACC_routine_seq" #add 'acc routine' directive
+PYFT_OPTS="$PYFT_OPTS --stopScopes sub:SHALLOW_MF#sub:ICE_ADJUST#sub:RAIN_ICE#sub:RAIN_ICE_OLD#sub:TURB#sub:LIMA_ADJUST_SPLIT#sub:LIMA"
+PYFT_OPTS="$PYFT_OPTS --setFalseIfStmt TURBN%LTURB_DIAG --setFalseIfStmt TURBN%LTURB_FLX" #remove diagnostic output
+PYFT_OPTS="$PYFT_OPTS --buildACCTypeHelpers"
+PYFT_OPTS="$PYFT_OPTS --applyCPPifdef REPRO48 --deleteNonColumnCallsPHYEX --removeIJDim --addStack $stackMode"
+PYFT_OPTS="$PYFT_OPTS --removeACC --addACC_routine_seq" #remove pre-existing ACC directives, then add 'acc routine seq' directive
+PYFT_OPTS="$PYFT_OPTS
 $specificTransfos
-^turb/mode_bl_depth_diag.F90:=:--removeCall module:MODE_BL_DEPTH_DIAG/sub:BL_DEPTH_DIAG_1D BL_DEPTH_DIAG_3D $common_opts
-^micro/rain_ice.F90:=:--removeCall sub:RAIN_ICE ELEC_TENDENCIES $common_opts"
+^turb/mode_bl_depth_diag.F90:=:--removeCall module:MODE_BL_DEPTH_DIAG/sub:BL_DEPTH_DIAG_1D BL_DEPTH_DIAG_3D $PYFT_OPTS
+^micro/rain_ice.F90:=:--removeCall sub:RAIN_ICE ELEC_TENDENCIES $PYFT_OPTS"
 

tools/INSTALL.sh

@@ -4,7 +4,7 @@
 set -e
 set -o pipefail #abort if left command on a pipe fails
 
-pyft_version=3bead4d4b54baafc113f239f72e8bd90b6381dcc
+pyft_version=f63de396176e3e91a5cdedae2d098dbbe3497ae2
 
 #This script installs PHYEX
 #Call the script with the -h option to get more information.

tools/check_commit_ial.sh

@@ -536,7 +536,7 @@ if [ $packupdate -eq 1 -o $packcreation -eq 1 ]; then
     cd $HOMEPACK/$name/src/local/phyex
 
     if [ $useexpand == 1 ]; then
-      expand_options="--mnhExpand"
+      expand_options="--mnhExpand --removeACC"
     else
       expand_options=""
     fi

tools/prep_code.sh

@@ -23,6 +23,7 @@ function usage {
   echo "                      or a tag with the following syntax: tags/TAG where TAG is the tag name"
   echo "-m MODEL              merge the code under the common directory with the code specific to MODEL model"
   echo "--mnhExpand           option passed to the pyft tool"
+  echo "--removeACC           option passed to the pyft tool"
   echo "-p                    push the result as a new branch"
   echo "-s SUB                subdiretory or file (under src) to consider when merging and applying pyft"
   echo "--renameFf            rename .F90 into .f90"
@@ -38,7 +39,7 @@ function usage {
   echo "* If the -c option is not provided, DIRECTORY must already contain files and directory as if"
   echo "  it was the result of a git checkout"
   echo "* If the -m option is used, directory tree is modified, only relevant code is kept"
-  echo "* If --mnhExpand is not used, pyft is not called at all"
+  echo "* If none of --mnhExpand, --removeACC, --pyft_opts_env or PYFT_OPTIONS is not used, pyft is not called at all"
   echo "* -s options are mandatory for -m, -D and -p options"
   echo "* -p option is allowed only if -c and -m options are provided"
   echo ""
@@ -101,6 +102,7 @@ while [ -n "$1" ]; do
     '-c') checkout_point="$2"; shift;;
     '-m') model="$2"; shift;;
     '--mnhExpand') pyft_options="$pyft_options $1";;
+    '--removeACC') pyft_options="$pyft_options $1";;
     '-s') subs="$subs $2"; shift;;
     '-p') push=1;;
     '--renameFf') renameFf=1;;

tools/pybinding.py

@@ -44,7 +44,6 @@ def pybinding(fortran_in, scope, fortran_out, python_out, libso,
             'func': 'FUNCTION'}[kind]
 
     #Loop on all the dummy arguments and prepare their use
-    varList = pftin.getVarList()
     argList1 = [] #argument list of the main public interface
     argList2 = [] #argument list to the existing FORTRAN routine
     moduleList = [] #declarative module to add
@@ -56,7 +55,7 @@ def pybinding(fortran_in, scope, fortran_out, python_out, libso,
     docstringIN = ["Input arguments:"]
     docstringOUT = ["Output arguments:"]
     for N in scopeNode.findall('.//{*}dummy-arg-LT/{*}arg-N/{*}N'):
-        var = pftin.findVar(n2name(N), scope, varList=varList, exactScope=True)
+        var = pftin.varList.findVar(n2name(N), scope, exactScope=True)
         vartype = var['t'].replace(' ', '').upper()
         if vartype == 'TYPE(DIMPHYEX_T)':
             moduleList.append('USE MODD_DIMPHYEX,   ONLY: DIMPHYEX_t')